Inference on the structure of gene regulatory networks
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Publication:2116003
Abstract: In this paper, we conduct theoretical analyses on inferring the structure of gene regulatory networks. Depending on the experimental method and data type, the inference problem is classified into 20 different scenarios. For each scenario, we discuss the problem that with enough data, under what assumptions, what can be inferred about the structure. For scenarios that have been covered in the literature, we provide a brief review. For scenarios that have not been covered in literature, if the structure can be inferred, we propose new mathematical inference methods and evaluate them on simulated data. Otherwise, we prove that the structure cannot be inferred.
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Cites work
- scientific article; zbMATH DE number 1432797 (Why is no real title available?)
- scientific article; zbMATH DE number 3411031 (Why is no real title available?)
- A data-driven method to learn a jump diffusion process from aggregate biological gene expression data
- A multi-phenotypic cancer model with cell plasticity
- A qualitative analysis of x=Ax+b
- Causal inference in statistics. A primer
- Comparing different ODE modelling approaches for gene regulatory networks
- Extracting the time-dependent transmission rate from infection data via solution of an inverse ODE problem
- Inference on tissue transplantation experiments
- Mathematical representation of Clausius' and Kelvin's statements of the second law and irreversibility
- Numerical computation in science and engineering
- Probability
- Testing conditional independence using maximal nonlinear conditional correlation
- When is a Matrix Sign Stable?
Cited in
(22)- Gene regulatory networks. Methods and protocols
- scientific article; zbMATH DE number 6610882 (Why is no real title available?)
- Structure-function relations are subtle in genetic regulatory networks
- A graphical chain model for inferring regulatory system networks from gene expression profiles
- Inferring gene networks from steady-state response to single-gene perturbations
- Computational Methods for Inference of Gene Regulatory Networks from Gene Expression Data
- Modeling Parsimonious Putative Regulatory Networks: Complexity and Heuristic Approach
- Network inference and biological dynamics
- Identifiability and inference of pathway motifs by epistasis analysis
- Inferring gene regulatory networks by an order independent algorithm using incomplete data sets
- Inference on autoregulation in gene expression with variance-to-mean ratio
- Inferring gene regulatory networks by PCA-CMI using Hill climbing algorithm based on MIT score and SORDER method
- A posterior probability approach for gene regulatory network inference in genetic perturbation data
- Inferring stable genetic networks from steady-state data
- Order-of-mutation effects on cancer progression: models for myeloproliferative neoplasm
- Inference of signaling and gene regulatory networks by steady-state perturbation experiments: structure and accuracy
- Identifying gene regulatory networks from experimental data
- WENDY: covariance dynamics based gene regulatory network inference
- Inference on tissue transplantation experiments
- EVIDENCE OF SCALE-FREE TOPOLOGY IN GENE REGULATORY NETWORK OF HUMAN TISSUES
- Inferring biomolecular interaction networks based on convex optimization
- Constrained community-based gene regulatory network inference
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