ARACNE

swMATH17200MaRDI QIDQ29061FDOQ29061

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Official website: http://bmcbioinformatics.biomedcentral.com/articles/10.1186/1471-2105-7-S1-S7

Cited In (only showing first 100 items - show all)

• Copula index for detecting dependence and monotonicity between stochastic signals
• Inferring bi-directional interactions between circadian clock genes and metabolism with model ensembles
• Gene regulatory networks. Methods and protocols
• Variability of betweenness centrality and its effect on identifying essential genes
• Springer Handbook of Bio-/Neuroinformatics
• High-dimensional structure learning of binary pairwise Markov networks: a comparative numerical study
• Identifying dynamical time series model parameters from equilibrium samples, with application to gene regulatory networks
• Network modeling in biology: statistical methods for gene and brain networks
• A Bayesian approach to the analysis of asymmetric association for two-way contingency tables
• Differential network inference via the fused D-trace loss with cross variables
• Inference of gene regulatory networks using Bayesian nonparametric regression and topology information
• Bioinformatics. Volume II: structure, function, and applications
• Detecting direct associations in a network by information theoretic approaches
• Loss of conservation of graph centralities in reverse-engineered transcriptional regulatory networks
• Reconstructing nonlinear networks subject to fast-varying noises by using linearization with expanded variables
• Constrained community-based gene regulatory network inference
• Discovering gene association networks by multi-objective evolutionary quantitative association rules
• Inferring dynamic gene regulatory networks with low-order conditional independencies -- an evaluation of the method
• Inference of \(S\)-system models of genetic networks by solving one-dimensional function optimization problems
• Asymptotic stability in probability for stochastic Boolean networks
• Graph centrality based prediction of cancer genes
• Autoregressive models for gene regulatory network inference: sparsity, stability and causality issues
• Infomax strategies for an optimal balance between exploration and exploitation
• The randomized information coefficient: assessing dependencies in noisy data
• Statistical inference of regulatory networks for circadian regulation
• Penalized differential pathway analysis of integrative oncogenomics studies
• A posterior probability approach for gene regulatory network inference in genetic perturbation data
• Rnamotif
• WGCNA
• Textual data compression in computational biology: algorithmic techniques
• BioBayes
• G1DBN
• minet
• SimpleMKL
• SynTReN
• ITE
• Netsim
• BiNGO
• Diffcorr
• PyPanda
• topologyGSA
• Enrichr
• HHpred
• SIRENE
• bc3net
• TRANSWESD
• TRANSFAC
• DGCA
• From genome-scale data to models of infectious disease: a Bayesian network-based strategy to drive model development
• JASPAR
• MIDER
• ADAM
• booleannet
• sparsebn
• GeneNetWeaver
• Pathway Commons
• GADAG
• CePa
• CentiServer
• NeoBio
• conting
• starBase
• Sincera
• OKVAR-Boost
• gptk
• CGBayesNets
• TIGRESS
• RegulonDB
• DNA
• BGRMI
• DINGO
• GeNGe
• NetBenchmark
• SCENIC
• SCODE
• GenClust
• PSoL
• YEASTRACT
• ToppGene Suite
• CNM
• L1General
• ARACNe-AP
• ComiRNet
• INLOCANDA
• MrTADFinder
• SimSeq
• RapidMic
• ProCKSI
• RNACompress
• DNACompress
• VisANT
• DREAM4
• REVEAL
• CDNA
• GlobalMIT
• GENIE3
• JDINAC
• VCNet
• Exploiting causality in gene network reconstruction based on graph embedding
• A mathematical program to refine gene regulatory networks

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