ARACNE
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Cited in
(only showing first 100 items - show all)- Efficient identification of independence networks using mutual information
- Inferring large graphs using \(\ell_1\)-penalized likelihood
- Reconstructing nonlinear networks subject to fast-varying noises by using linearization with expanded variables
- Constrained community-based gene regulatory network inference
- Discovering gene association networks by multi-objective evolutionary quantitative association rules
- Copula index for detecting dependence and monotonicity between stochastic signals
- Inferring bi-directional interactions between circadian clock genes and metabolism with model ensembles
- Gene regulatory networks. Methods and protocols
- Inferring dynamic gene regulatory networks with low-order conditional independencies -- an evaluation of the method
- Variability of betweenness centrality and its effect on identifying essential genes
- Inference of \(S\)-system models of genetic networks by solving one-dimensional function optimization problems
- Asymptotic stability in probability for stochastic Boolean networks
- Springer Handbook of Bio-/Neuroinformatics
- High-dimensional structure learning of binary pairwise Markov networks: a comparative numerical study
- Graph centrality based prediction of cancer genes
- Autoregressive models for gene regulatory network inference: sparsity, stability and causality issues
- Infomax strategies for an optimal balance between exploration and exploitation
- The randomized information coefficient: assessing dependencies in noisy data
- Statistical inference of regulatory networks for circadian regulation
- Identifying dynamical time series model parameters from equilibrium samples, with application to gene regulatory networks
- Network modeling in biology: statistical methods for gene and brain networks
- Bio-PEPA
- Rnamotif
- WGCNA
- BioBayes
- G1DBN
- minet
- SimpleMKL
- SynTReN
- ITE
- Netsim
- BiNGO
- Diffcorr
- PyPanda
- topologyGSA
- Enrichr
- HHpred
- SIRENE
- bc3net
- TRANSWESD
- TRANSFAC
- DGCA
- Penalized differential pathway analysis of integrative oncogenomics studies
- JASPAR
- MIDER
- ADAM
- booleannet
- sparsebn
- GeneNetWeaver
- Pathway Commons
- GADAG
- CePa
- CentiServer
- NeoBio
- conting
- starBase
- Sincera
- OKVAR-Boost
- gptk
- CGBayesNets
- TIGRESS
- RegulonDB
- DNA
- BGRMI
- DINGO
- GeNGe
- NetBenchmark
- SCENIC
- SCODE
- GenClust
- PSoL
- YEASTRACT
- ToppGene Suite
- CNM
- L1General
- ARACNe-AP
- ComiRNet
- INLOCANDA
- MrTADFinder
- SimSeq
- RapidMic
- ProCKSI
- RNACompress
- DNACompress
- VisANT
- DREAM4
- REVEAL
- CDNA
- GlobalMIT
- GENIE3
- JDINAC
- VCNet
- A posterior probability approach for gene regulatory network inference in genetic perturbation data
- A Bayesian approach to the analysis of asymmetric association for two-way contingency tables
- Textual data compression in computational biology: algorithmic techniques
- From genome-scale data to models of infectious disease: a Bayesian network-based strategy to drive model development
- Exploiting causality in gene network reconstruction based on graph embedding
- A mathematical program to refine gene regulatory networks
- Differential network inference via the fused D-trace loss with cross variables
- Operator-valued kernel-based vector autoregressive models for network inference
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