Bio-PEPA
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swMATH1361MaRDI QIDQ14101FDOQ14101
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Official website: http://homepages.inf.ed.ac.uk/jeh/Bio-PEPA/biopepa.html
Cited In (only showing first 100 items - show all)
- Relating PDEs in cylindrical coordinates and CTMCs with levels of concentration
- Identification of components in biochemical pathways: extensive aqpplication to SBML models
- An algorithm for the identification of components in biochemical pathways
- Hybrid behaviour of Markov population models
- Smoothed model checking for uncertain continuous-time Markov chains
- Transactions on Computational Systems Biology XIII
- Probabilistic approximations of ODEs based bio-pathway dynamics
- Modelling and analysing neural networks using a hybrid process algebra
- Stochastic biological modelling in the presence of multiple compartments
- Equivalences for a biological process algebra
- Verification of membrane systems with delays via Petri nets with delays
- Stochastic Calculus of Looping Sequences for the Modelling and Simulation of Cellular Pathways
- General patterns of interaction in stochastic fusion
- Modular modelling of signalling pathways and their cross-talk
- Foundational aspects of multiscale modeling of biological systems with process algebras
- Simulation techniques for the calculus of wrapped compartments
- HYPE Applied to the Modelling of Hybrid Biological Systems
- A semantic equivalence for Bio-PEPA based on discretisation of continuous values
- Some investigations concerning the CTMC and the ODE model derived from bio-PEPA
- Process algebra with hooks for models of pattern formation
- Modelling biological compartments in bio-PEPA
- External control in process algebra for systems biology
- Membrane automata for modeling biomolecular processes
- On fluidization of discrete event models: Observation and control of continuous Petri nets
- Statistical inference of regulatory networks for circadian regulation
- The attributed pi-calculus with priorities
- Refining dynamics of gene regulatory networks in a stochastic \(\pi\)-calculus framework
- Model checking of biological systems
- Component identification in biochemical pathways
- PRISM
- SPADES
- LiQuor
- MRMC
- ProbDiVinE
- SLMC
- StochKit
- BioBayes
- BioShape
- Pirlo
- BioNetGen
- SYMBA
- PARAM
- BIOCHAM
- Cellerator
- Celldesigner
- Bio-PEPAd
- PEPA
- STOCKS
- RoVerGeNe
- SpiCO
- BioSPI
- KEGG2SBML
- BioAmbient Machine
- BlenX
- LBS
- MARCIE
- SABRE
- BioModels
- Xtext
- ARACNE
- Hybrid semantics for Bio-PEPA
- Executable biochemical space for specification and analysis of biochemical systems
- CARMA
- ERODE
- PALOMA
- SCEL
- Rabinizer
- NFsim
- Hy3S
- gptk
- Smoldyn
- StochPy
- Diurnal
- Ntccrt
- Cyto-Sim
- Dizzy
- BioTapestry
- Symbolic computation of differential equivalences
- Process Algebra Modelling Styles for Biomolecular Processes
- Bio-PEPA: an extension of the process algebra PEPA for biochemical networks
- Dynamical Systems and Stochastic Programming: To Ordinary Differential Equations and Back
- Formalisms for Specifying Markovian Population Models
- Bio-PEPAd: a non-Markovian extension of Bio-PEPA
- Proceedings of the first workshop ``From biology to concurrency and back (FBTC 2007), Lisbon, Portugal, September 8, 2007
- A language for biochemical systems: design and formal specification
- Fundamental results on the reactionâdiffusion equations associated with a PEPA model
- A process algebra framework for multi-scale modelling of biological systems
- nano\(\kappa\): A calculus for the modeling and simulation of nano devices
- Inferring bi-directional interactions between circadian clock genes and metabolism with model ensembles
- Gene regulatory networks. Methods and protocols
- Symbolic computation of differential equivalences
- Applying mean-field approximation to continuous time Markov chains
- Targeting Bayes factors with direct-path non-equilibrium thermodynamic integration
- Multiple verification in complex biological systems: the bone remodelling case study
- How adaptive and reliable is your program?
- Quantitative abstractions for collective adaptive systems
- Transactions on Computational Systems Biology XII. Special issue on modeling methodologies
- Formal biochemical space with semantics in Kappa and BNGL
- Unwinding biological systems
- A declarative view of signaling pathways
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