WGCNA

MaRDI QIDQ19178swMATHCRANWikidataFDO

Last update 7 December 2023

Copyright license GNU General Public License, version 2.0, GNU General Public License, version 3.0

Software version identifier 1.72-1, 0.92-3, 0.93, 0.94, 0.95, 0.96, 0.97, 0.98, 0.99, 1.00, 1.10-2, 1.11-1, 1.11-2, 1.11-3, 1.11, 1.12, 1.13, 1.14, 1.15, 1.17, 1.18-1, 1.18-2, 1.18, 1.19, 1.20, 1.22, 1.23-1, 1.25-1, 1.25-2, 1.25, 1.26, 1.27-1, 1.34, 1.41-1, 1.42, 1.43, 1.46, 1.47, 1.48, 1.49, 1.51, 1.60, 1.61, 1.62, 1.63, 1.64-1, 1.66, 1.67, 1.68, 1.69, 1.70-3, 1.71, 1.72-5

Official website https://cran.r-project.org/package=WGCNA

Source code repository https://github.com/cran/WGCNA

Description

Functions necessary to perform Weighted Correlation Network Analysis on high-dimensional data as originally described in Horvath and Zhang (2005) <doi:10.2202/1544-6115.1128> and Langfelder and Horvath (2008) <doi:10.1186/1471-2105-9-559>. Includes functions for rudimentary data cleaning, construction of correlation networks, module identification, summarization, and relating of variables and modules to sample traits. Also includes a number of utility functions for data manipulation and visualization.

Cites work

• A General Framework for Weighted Gene Co-Expression Network Analysis
• WGCNA: an R package for weighted correlation network analysis

Cited in

(91)

• DiPALM
• molnet
• SAM
• sparseGAM
• netReg
• TGCnA
• FREEtree
• DCD
• eclust
• A testing based approach to the discovery of differentially correlated variable sets
• A statistical method for measuring activation of gene regulatory networks
• Loss of conservation of graph centralities in reverse-engineered transcriptional regulatory networks
• Gene regulatory networks. Methods and protocols
• Computational cell biology. Methods and protocols
• Quantitative integration of radiomic and genomic data improves survival prediction of low-grade glioma patients
• fdrtool
• A global and physical mechanism of gastric cancer formation and progression
• Network modeling in biology: statistical methods for gene and brain networks
• minet
• huge
• Clustering methods for single-cell RNA-sequencing expression data: performance evaluation with varying sample sizes and cell compositions
• GUniFrac
• minerva
• Review on statistical methods for gene network reconstruction using expression data
• A co-expression modules based gene selection for cancer recognition
• ESSC
• FAMT
• hglasso
• Statistical properties of gene-gene correlations in omics experiments
• spcov
• SynTReN
• dynamicTreeCut
• BioNet
• NIH Toolbox
• qgraph
• Diffcorr
• PyPanda
• topologyGSA
• Knorm
• LAS
• ARACNE
• DCGL
• DGCA
• Sparse factor model for co-expression networks with an application using prior biological knowledge
• VennDiagram
• missMethyl
• wTO
• Matrix eQTL
• graphite
• vis.js
• GCTA
• minepy
• SC3
• Sincera
• c060
• MRPC
• GSNCA
• maigesPack
• MIM
• DNA
• A method for generating realistic correlation matrices
• SCENIC
• DINGO
• GenClust
• rvinecopulib
• MMS
• TestBMN
• CIDR
• FATCAT
• powsimR
• MrTADFinder
• HotNet
• psychonetrics
• TGCnA: temporal gene coexpression network analysis using a low-rank plus sparse framework
• Method of the Joint Clustering in Network and Correlation Spaces
• The cluster correlation-network support vector machine for high-dimensional binary classification
• DREAM4
• CorShrink
• scola
• Deep learning for inferring gene relationships from single-cell expression data
• Network-based survival analysis to discover target genes for developing cancer immunotherapies and predicting patient survival
• PLANEX
• GeneFriends
• BioM2
• TOmicsVis
• MACP
• Frontiers in mathematical modelling of the lipid metabolism under normal conditions and its alterations in heart diseases
• Patterns
• Network assisted analysis to reveal the genetic basis of autism
• DrDimont
• scpoisson

This page was built for software: WGCNA