MetaCyc
From MaRDI portal
Cited in
(56)- Efficient reconstruction of metabolic pathways by bidirectional chemical search
- PetriNets
- Metabolic networks are NP-hard to reconstruct
- GEPASI
- TRANSPATH
- gNCA
- Cytoscape
- Celldesigner
- A large-scale assessment of exact lumping of quantitative models in the biomodels repository
- Algorithms for topology-free and alignment network queries
- Bow
- Recent developments in parameter estimation and structure identification of biochemical and genomic systems
- LTR_FINDER
- BioModels
- QNet
- KEGG
- KEGGtranslator
- JSBML
- Ernest
- Reactome
- COBRApy
- PoCaB: A Software Infrastructure to Explore Algebraic Methods for Bio-chemical Reaction Networks
- Systems Biology: The Next Frontier for Bioinformatics
- ModEnzA: accurate identification of metabolic enzymes using function specific profile HMMs with optimised discrimination threshold and modified emission probabilities
- UniProt
- IntAct
- Mixnet
- FANMOD
- SuBliMinaL
- HMDB
- NeMoFinder
- Kavosh
- Graemlin
- PathBLAST
- meneco
- fastGapFill
- TANDEM
- ESSYNS
- Computational challenges in systems biology
- GraMoFoNe
- SIMBio
- CellPublisher
- EFICAz
- WinBEST-KIT
- QPath
- Dizzy
- VisANT
- TAMBIS
- GNA
- Hybrid metabolic network completion
- Distributed and sequential algorithms for bioinformatics
- BRENDA
- Petri nets for modelling metabolic pathways: a survey
- Incorporating biological information into linear models: a Bayesian approach to the selection of pathways and genes
- Searching and inferring colorful topological motifs in vertex-colored graphs
- Hypothesizing about signaling networks
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