UniProt
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Cited in
(only showing first 100 items - show all)- It's about time: signal recognition in staged models of protein translocation
- PALADIN
- SeqLib
- libsequence
- Mason
- Taxator-tk
- FLEXBAR
- shiki
- ProtVec
- DeepGOPlus
- DeepGO
- UDSMProt
- DeepLoc
- eXist
- iProLINK
- BioGRID
- GeneGrid
- SubChlo: predicting protein subchloroplast locations with pseudo-amino acid composition and the evidence-theoretic \(K\)-nearest neighbor (ET-KNN) algorithm
- An isotope dilution model for partitioning of phenylalanine and tyrosine uptake by the liver of lactating dairy cows
- A Bayesian hierarchical model for identifying significant polygenic effects while controlling for confounding and repeated measures
- Rfam
- BlaPred: predicting and classifying -lactamase using a 3-tier prediction system via Chou's general PseAAC
- Identify Gram-negative bacterial secreted protein types by incorporating different modes of PSSM into Chou's general PseAAC via Kullback-Leibler divergence
- \textit{In silico} analysis of \textit{plasmodium falciparum} CDPK5 protein through molecular modeling, docking and dynamics
- Predicting the ligand-binding properties of \textit{Borrelia burgdorferi} s.s. Bmp proteins in light of the conserved features of related \textit{Borrelia} proteins
- Gene regulatory networks. Methods and protocols
- Knowledge-based computational mutagenesis for predicting the disease potential of human non-synonymous single nucleotide polymorphisms
- A neutral evolution test derived from a theoretical amino acid substitution model
- Dforml(KNN)-PseAAC: detecting formylation sites from protein sequences using K-nearest neighbor algorithm via Chou's 5-step rule and pseudo components
- Highly accurate prediction of protein self-interactions by incorporating the average block and PSSM information into the general PseAAC
- Bi-PSSM: position specific scoring matrix based intelligent computational model for identification of mycobacterial membrane proteins
- iPHLoc-ES: identification of bacteriophage protein locations using evolutionary and structural features
- Two-intermediate model to characterize the structure of fast-folding proteins
- Predicting mycobacterial proteins subcellular locations by incorporating pseudo-average chemical shift into the general form of Chou's pseudo amino acid composition
- A comparative computational analysis of protein sequences and literature mining classify `orphan' neurotransmitter transporters
- Metabolic networks are NP-hard to reconstruct
- Biopython
- Protein-protein interactions can be predicted using coiled coil co-evolution patterns
- The combinatorics of overlapping genes
- Fixed-size determinantal point processes sampling for species phylogeny
- MetaCyc
- EDISON
- Sequence analysis and modern C++. The creation of the SeqAn3 bioinformatics library
- Taverna
- Spikenet
- Prediction of presynaptic and postsynaptic neurotoxins based on feature extraction
- TYLER, a fast method that accurately predicts cyclin-dependent proteins by using computation-based motifs and sequence-derived features
- Cytoscape
- Iterative SE(3)-transformers
- Deep neural learning based protein function prediction
- Sequence graph transform (SGT): a feature embedding function for sequence data mining
- TAX
- mpiBLAST
- FASTA
- AutoDock Vina
- A new class of metrics for learning on real-valued and structured data
- A large-scale assessment of exact lumping of quantitative models in the biomodels repository
- HMMER
- bioperl
- Predicting ion channels and their types by the dipeptide mode of pseudo amino acid composition
- EMBOSS
- GOstat
- Large-scale local causal inference of gene regulatory relationships
- Sylamer
- Maintenance of datalog materialisations revisited
- A novel extended Pareto optimality consensus model for predicting essential proteins
- Revisiting chameleon sequences in the protein data bank
- Prediction of \(\beta\)-lactamase and its class by Chou's pseudo-amino acid composition and support vector machine
- ClustalW
- Predicting protein sub-Golgi locations by combining functional domain enrichment scores with pseudo-amino acid compositions
- Algorithms for learning parsimonious context trees
- Pengines
- Naccess
- SURFNET
- ECS: an automatic enzyme classifier based on functional domain composition
- iProLINK: an integrated protein resource for literature mining
- The iProClass integrated database for protein functional analysis
- GeneGrid: Architecture, implementation and application
- MUSCLE
- iPARTS
- KEGG
- JSBML
- BiNGO
- CLENCH
- Sequence-based prediction of protein-protein interaction sites with L1-logreg classifier
- Jstacs
- Affymetrix
- Spreading mechanics and differentiation of astrocytes during retinal development
- Reactome
- Computational identification of Shenshao Ningxin Yin as an effective treatment for novel coronavirus infection (COVID-19) with myocarditis
- An efficient strategy for identifying essential proteins based on homology, subcellular location and protein-protein interaction information
- LUBM
- GPTIPS
- MALDIquant
- MySQL
- CDK
- Highly bi-connected subgraphs for computational protein function annotation
- PISCES
- AUTO-MUTE
- Cd-hit
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