ClustalW
From MaRDI portal
Cited in
(only showing first 100 items - show all)- In silico analyses of a new group of fungal and plant RecQ4-homologous proteins
- Detecting conserved secondary structures in RNA molecules using constrained structural alignment
- Fast embedding methods for clustering tens of thousands of sequences
- A Lagrangian relaxation approach for the multiple sequence alignment problem
- Computing the longest topological common subsequence of a symbol-wise totally ordered directed acyclic graph and a sequence
- jETI
- Two applications of the divide \(\&\) conquer principle in the molecular sciences
- Improving the divide-and-conquer approach to sum-of-pairs multiple sequence alignment
- Testing homology with contact accepted mutatiOn (CAO): A contact-based Markov model of protein evolution
- iB4e
- eXist
- ViDE
- BioGRID
- FastLSA
- GeneGrid
- TreeSOM
- Phylogenetic inferences from molecular sequences: Review and critique
- Fast computation of maximum likelihood trees by numerical approximation of amino acid replacement probabilities
- Long range clustering of oligonucleotides containing the CG signal
- Statistical analysis and exposure status classification of transmembrane beta barrel residues
- A novel algorithm for macromolecular epitope matching
- HAPLO
- Rfam
- Probing the protein space for extending the detection of weak homology folds
- Bilateral similarity function: a novel and universal method for similarity analysis of biological sequences
- Identifying anticancer peptides by using a generalized chaos game representation
- In silico docking reveals possible riluzole binding sites on Nav1.6 sodium channel: implications for amyotrophic lateral sclerosis therapy
- A comparative computational analysis of protein sequences and literature mining classify `orphan' neurotransmitter transporters
- ROADRUNNER
- Towards a comprehensive collection of diagnostic patterns for protein sequence classification
- fastDNAml
- A non-local gap-penalty for profile alignment
- Biopython
- PHYLIP
- MrBayes
- RAxML
- PAUP*
- Macrodox
- MAFFT
- Taverna
- Balibase
- CAP3
- Competitive evolution of H1N1 and H3N2 influenza viruses in the United States: a mathematical modeling study
- MEGA
- Cytoscape
- Sequence graph transform (SGT): a feature embedding function for sequence data mining
- BioProspector
- mpiBLAST
- FASTA
- Comparisons of dN/dS are time dependent for closely related bacterial genomes
- New motifs within the NB-ARC domain of R proteins: probable mechanisms of integration of geminiviral signatures within the host species of fabaceae family and implications in conferring disease resistance
- Fine tuned exploration of evolutionary relationships within the protein universe
- HMMER
- bioperl
- RNA bioinformatics
- JIGSAW
- PAML
- EMBOSS
- Discrete wavelet packet transform based discriminant analysis for whole genome sequences
- DNA combinatorial messages and epigenomics: the case of chromatin organization and nucleosome occupancy in eukaryotic genomes
- A Dawson-like clustering of human mitochondrial DNA sequences based on protein coding region
- TMBpro
- ProSTRIP: a method to find similar structural repeats in three-dimensional protein structures
- Ligand-binding prediction in the resistance-nodulation-cell division (RND) proteins
- BlueSNP
- Biodoop
- MSAProbs
- 3DCoffee
- Expresso
- MICAlign
- PeakRanger
- CloudBLAST
- ProbCons
- DIALIGN
- MrsRF
- SeqWare
- Hadoop-BAM
- Eoulsan
- FX
- Seal
- CloudBurst
- CloudAligner
- A time warping approach to multiple sequence alignment
- The influence of taxon sampling on Bayesian divergence time inference under scenarios of rate heterogeneity among lineages
- SplitsTree
- Secator
- Why does \(\beta \)-secretase zymogen possess catalytic activity? Molecular modeling and molecular dynamics simulation studies
- Simulation of conformational changes occurring when a protein interacts with its receptor
- A combined approach for the classification of G protein-coupled receptors and its application to detect GPCR splice variants
- CLUSTAL
- DIALIGN-TX
- Phylogenetic distribution of DNA-binding transcription factors in bacteria and archaea
- MoDEL: an efficient strategy for ungapped local multiple alignment
- A note on clustering the functionally-related paralogues and orthologues of proteins: a case of the FK506-binding proteins (FKBPs)
- An adaptive and iterative algorithm for refining multiple sequence alignment
- ConPred\_elite: a highly reliable approach to transmembrane topology prediction
- Alignment using genetic programming with causal trees for identification of protein functions
- Vertebrate 2xRBD hnRNP proteins: a comparative analysis of genome, mRNA and protein sequences
- MSAID: multiple sequence alignment based on a measure of information discrepancy
- Integer linear programming as a tool for constructing trees from quartet data
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