Cited in
(only showing first 100 items - show all)- Consistency of a phylogenetic tree maximum likelihood estimator
- Ricci-Ollivier curvature of the rooted phylogenetic subtree-prune-regraft graph
- Information geometry for phylogenetic trees
- Euro-Par 2004 Parallel Processing
- Tropical sufficient statistics for persistent homology
- Numerical characteristics of word frequencies and their application to dissimilarity measure for sequence comparison
- Geometric ergodicity of a Metropolis-Hastings algorithm for Bayesian inference of phylogenetic branch lengths
- Data mining in bioinformatics
- Bayesian analysis of elapsed times in continuous‐time Markov chains
- Generalizing rate heterogeneity across sites in statistical phylogenetics
- Approximating geodesic tree distance
- Binary Steiner trees: structural results and an exact solution approach
- Parallel hierarchical sampling: a general-purpose interacting Markov chains Monte Carlo algorithm
- Large-Scale Multiple Sequence Alignment and Phylogeny Estimation
- Lost in space? Generalising subtree prune and regraft to spaces of phylogenetic networks
- Molecular modeling and molecular dynamics simulations of GPI 14 in \textit{Leishmania major}: insight into the catalytic site for active site directed drug design
- Bayesian factor models in characterizing molecular adaptation
- Nonbifurcating Phylogenetic Tree Inference via the Adaptive LASSO
- A comparison of ancestral state reconstruction methods for quantitative characters
- Reversible polymorphism-aware phylogenetic models and their application to tree inference
- Bayesian computation: a summary of the current state, and samples backwards and forwards
- The fossilized birth-death model for the analysis of stratigraphic range data under different speciation modes
- A Bayesian Model of AFLP Marker Evolution and Phylogenetic Inference
- ape
- BioJava
- fastDNAml
- PHENIX
- MEGA4
- PHYLIP
- RAxML
- PAUP*
- BIONJ
- GOSim
- Clustal
- BEAST
- LASER
- MAFFT
- MODELTEST
- pegas
- phangorn
- SeqinR
- Seq-Gen
- Balibase
- LINCS
- MEGA
- Spectronet
- AutoDock Vina
- Mesquite
- phytools
- HMMER
- Cluster-C
- PAML
- PhyML
- Geneland
- BEAGLE
- BEAUti
- pIQPNNI
- GPUTeraSort
- SplitsTree
- SETTLE
- rSPR
- Kalign
- MUSCLE
- T-coffee
- SPRSupertrees
- rwty
- FASTA3
- Clustal X
- PRALINE
- Bali-phy
- AVID
- Mugsy
- IQ-TREE
- DAMBE
- SABmark
- JBROWSE
- rBiopaxParser
- DendroPy
- YACOP
- ASTRID
- AWTY
- Consed
- NINJA
- TNT
- mvMORPH
- ASTRAL-II
- kdetrees
- BPEC
- TOPD/FMTS
- DIYABC
- PhyloNet
- PatternHunter
- Noisy
- STRAP
- AMoRe
- AceView
- Coot
- CLAP
- CLUSS
- CATH
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