Bayesian modelling of compositional heterogeneity in molecular phylogenetics

DOI10.1515/sagmb-2013-0077zbMath1298.92071OpenAlexW2071867171WikidataQ46848099 ScholiaQ46848099MaRDI QIDQ470316

Tom M. W. Nye, T. Martin Embley, Tom A. Williams, Richard J. Boys, Sarah E. Heaps

Publication date: 12 November 2014

Published in: Statistical Applications in Genetics and Molecular Biology (Search for Journal in Brave)

Full work available at URL: https://eprint.ncl.ac.uk/fulltext.aspx?url=199613/5A0C4DE6-AF98-4B5A-8655-9726BD084514.pdf&pub_id=199613

zbMATH Keywords

marginal likelihoodrootphylogeneticsbacterial evolutiontree of life

Mathematics Subject Classification ID

General biostatistics (92B15) Problems related to evolution (92D15) Applications of Markov chains and discrete-time Markov processes on general state spaces (social mobility, learning theory, industrial processes, etc.) (60J20)

Related Items (2)

Generalizing rate heterogeneity across sites in statistical phylogenetics ⋮ Incorporating compositional heterogeneity into Lie Markov models for phylogenetic inference

Uses Software

• MrBayes
• MAFFT
• MUSCLE
• Kalign
• AWTY
• M-Coffee
• BMGE

Cites Work

• Unnamed Item
• Computation of marginal likelihoods with data-dependent support for latent variables
• Marginal Likelihood Estimation via Power Posteriors
• The Calculation of Posterior Distributions by Data Augmentation
• Subtree transfer operations and their induced metrics on evolutionary trees

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