Cited in
(only showing first 100 items - show all)- Global alignment of molecular sequences via ancestral state reconstruction
- Multiple biological sequence alignment. Scoring functions, algorithms and evaluation
- Tropical sufficient statistics for persistent homology
- CONTRAlign: Discriminative Training for Protein Sequence Alignment
- Data mining techniques for the life sciences
- Multiobjective artificial fish swarm algorithm for multiple sequence alignment
- Cross-species network and transcript transfer
- Alignment-free phylogenetic reconstruction: Sample complexity via a branching process analysis
- A Lagrangian relaxation approach for the multiple sequence alignment problem
- On the comparison of incompatibility of split systems across different numbers of taxa
- MIRA
- ape
- Rfam
- GlobPlot
- MrBayes
- PHYLIP
- RAxML
- PAUP*
- BIONJ
- Clustal
- CONTRAlign
- LASER
- MODELTEST
- phangorn
- SeqinR
- Balibase
- Soap
- bioperl
- HMMER
- AUGUSTUS
- PAML
- PhyML
- 3DCoffee
- ClustalW
- CloudBurst
- DIALIGN
- GATK
- MSAProbs
- ProbCons
- CLUSTAL
- DIALIGN-TX
- SplitsTree
- Secator
- MUMMALS
- SMART
- Kalign
- LAGAN
- QSCORE
- MUSCLE
- GAGE
- MTRAP
- Wisconsin
- T-coffee
- Biostrings
- Samtools
- Clustal X
- tracker2
- MEGA6
- Bali-phy
- ANNOTATOR
- Rose
- ADP_EM
- BLAT
- ANCHOR
- Aber-OWL
- DBAli tools
- CUPSAT
- DUET
- ENCoM
- Brain
- ESpritz
- FUGUE
- GenePattern
- ARAGORN
- FoldUnfold
- HHblits
- APOLLO
- ANNIE
- LIGPLOT
- antiSMASH
- CISA
- MATRAS
- FUNC
- MAESTRO
- CCMpred
- IUPred
- GOSemSim
- CONFOLD
- NUCPLOT
- MeDor
- MetaDisorder
- HPOSim
- MOTIF-EM
- MFDp2
- IntelliGO
- dbCAN
- iPath
- OBSTRUCT
- dissectHMMER
- pKNOT
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