PHYLIP
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Cited in
(only showing first 100 items - show all)- WSE, a new sequence distance measure based on word frequencies
- RNA sequence, structure, and function: computational and bioinformatic methods
- A novel approach to phylogenetic trees: d‐Dimensional geometric Steiner trees
- Better greedy sequence clustering with fast banded alignment
- Why neighbor-joining works
- Comparing evolutionary distances via adaptive distance functions
- Increased accuracy in analytical molecular distance estimation
- Phylogenetic inference from binary sequences reduced by primary DNA sequences
- Probability Steiner trees and maximum parsimony in phylogenetic analysis
- Surnames in Western Europe: a comparison of the subcontinental populations through isonymy
- Surnames and dialects in France: population structure and cultural evolution
- A complexity-based measure and its application to phylogenetic analysis
- Analysis and visualization of seismic data using mutual information
- Supervised learning algorithms for multi-class classification problems with partial class memberships
- Numerical characteristics of word frequencies and their application to dissimilarity measure for sequence comparison
- LVB
- Phylogenetic analysis of DNA sequences based on the generalized pseudo-amino acid composition
- Adaptive memory programming: local search parallel algorithms for phylogenetic tree construc\-tion
- Genetic relationship between Kangal, Akbash and other dog populations
- Study of LZ-word distribution and its application for sequence comparison
- Genome analysis with the conditional multinomial distribution profile
- A tabu search algorithm for maximum parsimony phylogeny inference
- Markov invariants, plethysms, and phylogenetics
- Comparative genomic analysis by microbial COGs self-attraction rate
- Statistics for phylogenetic trees
- Generation of the exact distribution and simulation of matched nucleotide sequences on a phylogenetic tree
- Analysis of phylogenetics and evolution with R
- Group-theoretic models of the inversion process in bacterial genomes
- Spectral distortion measures for biological sequence comparisons and database searching
- A novel statistical measure for sequence comparison on the basis of \(k\)-word counts
- PULLPRU: a practical approach to estimate phylogenies from single nucleotide polymorphism haplotypes under the maximum parsimony criterion
- Phylogenetic analysis of DNA sequences with a novel characteristic vector
- Linear regression model of short \(k\)-word: a similarity distance suitable for biological sequences with various lengths
- A faster construction of greedy consensus trees
- Reversible polymorphism-aware phylogenetic models and their application to tree inference
- Concentration inequality for evolutionary trees
- PTreeRec: Phylogenetic Tree Reconstruction based on genome BLAST distance
- Financial time series analysis based on information categorization method
- Rphylip
- ASTRAL-Pro
- FastMulRFS
- Majority-rule (+) consensus trees
- Data mining in bioinformatics
- Integer linear programming as a tool for constructing trees from quartet data
- A new distributed alignment-free approach to compare whole proteomes
- Multidimensional cluster stability analysis from a Brazilian Bradyrhizobium sp. RFLP/PCR data set
- Bayesian analysis of elapsed times in continuous‐time Markov chains
- Bioinformatics. Volume I. Data, sequence analysis, and evolution
- Distributed and sequential algorithms for bioinformatics
- Sequence comparison via polar coordinates representation and curve tree
- Non-hereditary maximum parsimony trees
- Robust classifying of prokaryotic genomes
- scientific article; zbMATH DE number 1897895 (Why is no real title available?)
- Information categorization approach to literary authorship disputes
- Sequence similarity measures based on bounded Hamming distance
- Bioinformatics and the Cell
- A universal scaling law determines time reversibility and steady state of substitutions under selection
- Extraction of high quality \(k\)-words for alignment-free sequence comparison
- Inferring phylogenetic trees using answer set programming
- Error detection and correction of gene trees
- Consistency and inconsistency of consensus methods for inferring species trees from gene trees in the presence of ancestral population structure
- Vertebrate 2xRBD hnRNP proteins: a comparative analysis of genome, mRNA and protein sequences
- Modeling Dependence in Evolutionary Inference for Proteins
- Bioinformatics and phylogenetics. Seminal contributions of Bernard Moret
- Heterogeneity in DNA multiple alignments: modeling, inference, and applications in motif finding
- Multidimensional scaling analysis of the solar system objects
- Andalò di Negro's \textit{De compositione astrolabii}: a critical edition with English translation and notes
- Registering the evolutionary history in individual-based models of speciation
- Alignments of mitochondrial genome arrangements: applications to metazoan phylogeny
- Constructing Camin-Sokal Phylogenies Via Answer Set Programming
- Likelihood-mapping: A simple method to visualize phylogenetic content of a sequence alignment
- The gene expression matrix: Towards the extraction of genetic network architectures
- Cluster analysis of the large natural satellites in the solar system
- A new algorithm for inferring hybridization events based on the detection of horizontal gene transfers
- Comparison of protein secondary structures based on backbone dihedral angles
- Bootstrapping algorithms for gene duplication and speciation events
- On finding the Adams consensus tree
- Tumor classification using phylogenetic methods on expression data
- Artificial sequences and complexity measures
- PyPop: a software framework for population genomic: analyzing large-scale multi-locus genotype data
- DASACT: a decision aiding software for axiomatic consensus theory
- EdiPy: A resource to simulate the evolution of plant mitochondrial genes under the RNA editing
- Inferring evolutionary trees with strong combinatorial evidence
- TreeSOM: cluster analysis in the self-organizing map
- Geometry of the space of phylogenetic trees
- PyPop
- EdiPy
- TreeSOM
- SCHUR
- ape
- fastDNAml
- A fixed-parameter algorithm for minimum quartet inconsistency
- MEGA4
- MrBayes
- RAxML
- PAUP*
- BIONJ
- FindSteinerTree
- Clustal
- EPoS
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