Numerical characteristics of word frequencies and their application to dissimilarity measure for sequence comparison
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Publication:2413831
DOI10.1016/j.jtbi.2011.02.005zbMath1405.92213OpenAlexW1995534343WikidataQ48059883 ScholiaQ48059883MaRDI QIDQ2413831
Qi Dai, Yuhua Yao, Fukun Zhao, Xiaoqing Liu
Publication date: 17 September 2018
Published in: Journal of Theoretical Biology (Search for Journal in Brave)
Full work available at URL: https://doi.org/10.1016/j.jtbi.2011.02.005
Related Items (5)
Linear regression model of short \(k\)-word: a similarity distance suitable for biological sequences with various lengths ⋮ Extraction of high quality \(k\)-words for alignment-free sequence comparison ⋮ A measure of DNA sequence similarity by Fourier transform with applications on hierarchical clustering ⋮ Protein Sequence Comparison Method Based on 3-ary Huffman Coding ⋮ Phylogenetic analysis of DNA sequences based on \(k\)-word and rough set theory
Uses Software
Cites Work
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- Spectral distortion measures for biological sequence comparisons and database searching
- Statistical methods in bioinformatics. An introduction.
- PNN-curve: a new 2D graphical representation of DNA sequences and its application
- Cluster-C, an algorithm for the large-scale clustering of protein sequences based on the extraction of maximal cliques
- Statistical Measures of DNA Sequence Dissimilarity under Markov Chain Models of Base Composition
- A measure of the similarity of sets of sequences not requiring sequence alignment.
- Exact distribution of word occurrences in a random sequence of letters
- Distributional regimes for the number of k -word matches between two random sequences
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