PSI-BLAST

swMATH17324MaRDI QIDQ29184FDOQ29184

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Cited In (only showing first 100 items - show all)

• An efficient genomic signature ranking method for genomic island prediction from a single genome
• Application of max-plus algebra to biological sequence comparisons
• Numerical characteristics of word frequencies and their application to dissimilarity measure for sequence comparison
• Sequence graph transform (SGT): a feature embedding function for sequence data mining
• Comparative analysis of protein primary sequences with graph energy
• A methanogen hosted the origin of the genetic code
• A scheme for multiple sequence alignment optimization -- an improvement based on family representative mechanics features
• Title not available (Why is that?)
• The ribosome as a missing link in the evolution of life
• A randomized numerical aligner (rNA)
• An \textit{in silico} exploration of the neutral network in protein sequence space
• Structuring of the genetic code took place at acidic pH
• The evolution of the genetic code took place in an anaerobic environment
• Cooperative ``folding transition in the sequence space facilitates function-driven evolution of protein families
• Comparative protein structure modeling in genomics
• Self-similarity analysis of eubacteria genome based on weighted graph
• Prediction of protein interaction hot spots using rough set-based multiple criteria linear programming
• Investigations into refinements of Storey's method of multiple hypothesis testing minimising the FDR, and its application to test binomial data
• A potential in silico antibody-antigen based diagnostic test for precise identification of \textit{Acinetobacter baumannii}
• Normalized global alignment for protein sequences
• In silico docking reveals possible riluzole binding sites on Nav1.6 sodium channel: implications for amyotrophic lateral sclerosis therapy
• Overlapping genes coded in the 3'-to-5'-direction in mitochondrial genes and 3'-to-5' polymerization of non-complementary RNA by an `invertase'
• The origin of the genetic code in the ocean abysses: new comparisons confirm old observations
• Non-linear models based on simple topological indices to identify RNase III protein members
• Protein domain hierarchy Gibbs sampling strategies
• Length of the hypermutation motif DGYW/WRCH in the focus of statistical limits. Implications for a double-motif or extended motif recognition models
• Evidence theoretic protein fold classification based on the concept of hyperfold
• Fast and Deterministic Constant Factor Approximation Algorithms for LCS Imply New Circuit Lower Bounds
• Estimating the Gumbel scale parameter for local alignment of random sequences by importance sampling with stopping times
• Title not available (Why is that?)
• Bioinformatics. Volume II: structure, function, and applications
• Protein fold recognition by alignment of amino acid residues using kernelized dynamic time warping
• Species specific amino acid sequence-protein local structure relationships: an analysis in the light of a structural alphabet
• Compositional properties of alignments
• Mathematical multidimensional modelling and structural artificial intelligence pipelines provide insights for the designing of highly specific antiSARS-CoV2 agents
• PSSM-Suc: accurately predicting succinylation using position specific scoring matrix into bigram for feature extraction
• Prediction of potential thermostable proteins in \textit{Xylella fastidiosa}
• At2-AT3-profiling: a new look at synonymous codon usage
• ProTranslator: zero-shot protein function prediction using textual description
• TYLER, a fast method that accurately predicts cyclin-dependent proteins by using computation-based motifs and sequence-derived features
• Mathematical chemistry illustrations: a personal view of less known results
• Correlation between sequence, structure and function for trisporoid processing proteins in the model zygomycete \textit{Mucor mucedo}
• Comparative genomics study of \textit{Salmonella Typhimurium} LT2 for the identification of putative therapeutic candidates
• Probing the protein space for extending the detection of weak homology folds
• DRESS: dimensionality reduction for efficient sequence search
• \textit{In silico} analysis of \textit{plasmodium falciparum} CDPK5 protein through molecular modeling, docking and dynamics
• MFSC: multi-voting based feature selection for classification of Golgi proteins by adopting the general form of Chou's PseAAC components
• Prediction of RNA-protein interactions by combining deep convolutional neural network with feature selection ensemble method
• In silico analysis of antibody triggering biofilm associated protein in \textit{Acinetobacter baumannii}
• iPHLoc-ES: identification of bacteriophage protein locations using evolutionary and structural features
• New motifs within the NB-ARC domain of R proteins: probable mechanisms of integration of geminiviral signatures within the host species of fabaceae family and implications in conferring disease resistance
• Randomized probe selection algorithm for microarray design
• Biclustering scatter plots using data depth measures
• Extreme value theory in some statistical analysis of genomic sequences
• Proteome-wide classification and identification of mammalian-type GPCRs by binary topology pattern
• What’s Behind Blast
• \textit{SVM} ensemble based transfer learning for large-scale membrane proteins discrimination
• Efficient perturbation analysis of elastic network models -- application to acetylcholinesterase of T. Californica
• Application of complex demodulation on bZIP and bHLH-PAS protein domains
• An efficient similarity search based on indexing in large DNA databases
• Customized plug-in modules in metascheduler CSF4 for life sciences applications
• Phylogenetic distribution of DNA-binding transcription factors in bacteria and archaea
• The influence of gapped positions in multiple sequence alignments on secondary structure prediction methods
• The iProClass integrated database for protein functional analysis
• Alignment using genetic programming with causal trees for identification of protein functions
• Vertebrate 2xRBD hnRNP proteins: a comparative analysis of genome, mRNA and protein sequences
• Domain boundary prediction based on profile domain linker propensity index
• Homology modeling of membrane proteins: a critical assessment
• Operon prediction based on SVM
• The eukaryotic Pso2p/Snm1p family revisited: in silico analyses of Pso2p A, B and plasmodium groups
• Combinatorics of chromosomal rearrangements based on synteny blocks and synteny packs
• \textit{Pin-Align}: a new dynamic programming approach to align protein-protein interaction networks
• Statistical correction for functional metagenomic profiling of a microbial community with short NGS reads
• ModEnzA: Accurate Identification of Metabolic Enzymes Using Function Specific Profile HMMs with Optimised Discrimination Threshold and Modified Emission Probabilities
• Comparative gene finding. Models, algorithms and implementation
• Prediction of Carbohydrate-Binding Proteins from Sequences Using Support Vector Machines
• Better spaced seeds using quadratic residues
• Synergy of multi-label hierarchical ensembles, data fusion, and cost-sensitive methods for gene functional inference
• Co-evolution and information signals in biological sequences
• Sequence-based discrimination of protein-RNA interacting residues using a probabilistic approach
• NL MIND-BEST: a web server for ligands and proteins discovery -- theoretic-experimental study of proteins of \textit{Giardia lamblia} and new compounds active against \textit{Plasmodium falciparum}
• Prediction of subcellular location of apoptosis proteins combining tri-Gram encoding based on PSSM and recursive feature elimination
• DUC-curve, a highly compact 2D graphical representation of DNA sequences and its application in sequence alignment
• Fast profile matching algorithms - A survey
• Walking through protein sequence space
• A coprocessor architecture for fast protein structure prediction
• SVM-based detection of distant protein structural relationships using pairwise probabilistic suffix trees
• Unraveling the nature of the segmentation clock: Intrinsic disorder of clock proteins and their interaction map
• Finite-size corrections to Poisson approximations in general renewal-success processes
• Title not available (Why is that?)
• ECS: an automatic enzyme classifier based on functional domain composition
• Fine-grained parallel RNA secondary structure prediction using SCFGs on FPGA
• A method to distinguish between lysine acetylation and lysine methylation from protein sequences
• Predicting plant protein subcellular multi-localization by Chou's PseAAC formulation based multi-label homolog knowledge transfer learning
• PSIST: a scalable approach to indexing protein structures using suffix trees
• Annotating the protein-RNA interaction sites in proteins using evolutionary information and protein backbone structure
• Title not available (Why is that?)
• Predicting Golgi-resident protein types using pseudo amino acid compositions: approaches with positional specific physicochemical properties
• A method for discovering transmembrane beta-barrel proteins in Gram-negative bacterial proteomes
• A feature vector integration approach for a generalized support vector machine pairwise homology algorithm

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