PSI-BLAST

swMATH17324MaRDI QIDQ29184FDOQ29184

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Cited In (only showing first 100 items - show all)

• An efficient genomic signature ranking method for genomic island prediction from a single genome
• Application of max-plus algebra to biological sequence comparisons
• Numerical characteristics of word frequencies and their application to dissimilarity measure for sequence comparison
• Sequence graph transform (SGT): a feature embedding function for sequence data mining
• Comparative analysis of protein primary sequences with graph energy
• A methanogen hosted the origin of the genetic code
• A scheme for multiple sequence alignment optimization -- an improvement based on family representative mechanics features
• Title not available (Why is that?)
• The ribosome as a missing link in the evolution of life
• A randomized numerical aligner (rNA)
• An \textit{in silico} exploration of the neutral network in protein sequence space
• Structuring of the genetic code took place at acidic pH
• The evolution of the genetic code took place in an anaerobic environment
• Cooperative ``folding transition in the sequence space facilitates function-driven evolution of protein families
• Comparative protein structure modeling in genomics
• Self-similarity analysis of eubacteria genome based on weighted graph
• Prediction of protein interaction hot spots using rough set-based multiple criteria linear programming
• Investigations into refinements of Storey's method of multiple hypothesis testing minimising the FDR, and its application to test binomial data
• A potential in silico antibody-antigen based diagnostic test for precise identification of \textit{Acinetobacter baumannii}
• Normalized global alignment for protein sequences
• In silico docking reveals possible riluzole binding sites on Nav1.6 sodium channel: implications for amyotrophic lateral sclerosis therapy
• Overlapping genes coded in the 3'-to-5'-direction in mitochondrial genes and 3'-to-5' polymerization of non-complementary RNA by an `invertase'
• The origin of the genetic code in the ocean abysses: new comparisons confirm old observations
• Non-linear models based on simple topological indices to identify RNase III protein members
• Protein domain hierarchy Gibbs sampling strategies
• Length of the hypermutation motif DGYW/WRCH in the focus of statistical limits. Implications for a double-motif or extended motif recognition models
• Evidence theoretic protein fold classification based on the concept of hyperfold
• Fast and Deterministic Constant Factor Approximation Algorithms for LCS Imply New Circuit Lower Bounds
• Estimating the Gumbel scale parameter for local alignment of random sequences by importance sampling with stopping times
• Title not available (Why is that?)
• Bioinformatics. Volume II: structure, function, and applications
• Protein fold recognition by alignment of amino acid residues using kernelized dynamic time warping
• Species specific amino acid sequence-protein local structure relationships: an analysis in the light of a structural alphabet
• Compositional properties of alignments
• Mathematical multidimensional modelling and structural artificial intelligence pipelines provide insights for the designing of highly specific antiSARS-CoV2 agents
• PSSM-Suc: accurately predicting succinylation using position specific scoring matrix into bigram for feature extraction
• Prediction of potential thermostable proteins in \textit{Xylella fastidiosa}
• At2-AT3-profiling: a new look at synonymous codon usage
• ProTranslator: zero-shot protein function prediction using textual description
• TYLER, a fast method that accurately predicts cyclin-dependent proteins by using computation-based motifs and sequence-derived features
• Mathematical chemistry illustrations: a personal view of less known results
• Correlation between sequence, structure and function for trisporoid processing proteins in the model zygomycete \textit{Mucor mucedo}
• Comparative genomics study of \textit{Salmonella Typhimurium} LT2 for the identification of putative therapeutic candidates
• Probing the protein space for extending the detection of weak homology folds
• DRESS: dimensionality reduction for efficient sequence search
• \textit{In silico} analysis of \textit{plasmodium falciparum} CDPK5 protein through molecular modeling, docking and dynamics
• MFSC: multi-voting based feature selection for classification of Golgi proteins by adopting the general form of Chou's PseAAC components
• Prediction of RNA-protein interactions by combining deep convolutional neural network with feature selection ensemble method
• In silico analysis of antibody triggering biofilm associated protein in \textit{Acinetobacter baumannii}
• iPHLoc-ES: identification of bacteriophage protein locations using evolutionary and structural features
• Better spaced seeds using quadratic residues
• Synergy of multi-label hierarchical ensembles, data fusion, and cost-sensitive methods for gene functional inference
• Co-evolution and information signals in biological sequences
• Sequence-based discrimination of protein-RNA interacting residues using a probabilistic approach
• NL MIND-BEST: a web server for ligands and proteins discovery -- theoretic-experimental study of proteins of \textit{Giardia lamblia} and new compounds active against \textit{Plasmodium falciparum}
• Prediction of subcellular location of apoptosis proteins combining tri-Gram encoding based on PSSM and recursive feature elimination
• DUC-curve, a highly compact 2D graphical representation of DNA sequences and its application in sequence alignment
• Fast profile matching algorithms - A survey
• Walking through protein sequence space
• A coprocessor architecture for fast protein structure prediction
• SVM-based detection of distant protein structural relationships using pairwise probabilistic suffix trees
• Unraveling the nature of the segmentation clock: Intrinsic disorder of clock proteins and their interaction map
• Finite-size corrections to Poisson approximations in general renewal-success processes
• Title not available (Why is that?)
• ECS: an automatic enzyme classifier based on functional domain composition
• Fine-grained parallel RNA secondary structure prediction using SCFGs on FPGA
• A method to distinguish between lysine acetylation and lysine methylation from protein sequences
• Predicting plant protein subcellular multi-localization by Chou's PseAAC formulation based multi-label homolog knowledge transfer learning
• PSIST: a scalable approach to indexing protein structures using suffix trees
• Annotating the protein-RNA interaction sites in proteins using evolutionary information and protein backbone structure
• Title not available (Why is that?)
• Predicting Golgi-resident protein types using pseudo amino acid compositions: approaches with positional specific physicochemical properties
• A method for discovering transmembrane beta-barrel proteins in Gram-negative bacterial proteomes
• A feature vector integration approach for a generalized support vector machine pairwise homology algorithm
• In silico analyses of a new group of fungal and plant RecQ4-homologous proteins
• Sequence-based predictor of ATP-binding residues using random forest and mrmr-IFS feature selection
• Power analysis of database search using multiple scoring matrices
• DelPhi Web Server: A Comprehensive Online Suite for Electrostatic Calculations of Biological Macromolecules and Their Complexes
• On the retention of gene duplicates prone to dominant deleterious mutations
• TMBETADISC-RBF: discrimination of \(\beta\)-barrel membrane proteins using RBF networks and PSSM profiles
• Analyzing functional similarity of protein sequences with discrete wavelet transform
• Identify Gram-negative bacterial secreted protein types by incorporating different modes of PSSM into Chou's general PseAAC via Kullback-Leibler divergence
• Sequence alignment for masquerade detection
• Whole-genome prokaryotic clustering based on gene lengths
• An improved hybrid global optimization method for protein tertiary structure prediction
• Some operations research methods for analyzing protein sequences and structures
• Decision trees for hierarchical multi-label classification
• Fine tuned exploration of evolutionary relationships within the protein universe
• SecretP: identifying bacterial secreted proteins by fusing new features into Chou's pseudo-amino acid composition
• Evolutionary decision rules for predicting protein contact maps
• Classifying protein sequences using hydropathy blocks
• A feature extraction technique using bi-gram probabilities of position specific scoring matrix for protein fold recognition
• Detrended cross-correlation coefficient: application to predict apoptosis protein subcellular localization
• Convex hull analysis of evolutionary and phylogenetic relationships between biological groups
• New method for global alignment of 2 DNA sequences by the tree data structure
• SVM-BALSA: Remote homology detection based on Bayesian sequence alignment
• Multi-kernel transfer learning based on Chou's PseAAC formulation for protein submitochondria localization
• Prediction of Golgi-resident protein types using general form of Chou's pseudo-amino acid compositions: approaches with minimal redundancy maximal relevance feature selection
• Sequence alignment with arbitrary steps and further generalizations, with applications to alignments in linguistics
• Prediction of membrane protein types from sequences and position-specific scoring matrices

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