swMATH17324MaRDI QIDQ29184FDOQ29184
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Official website: http://nar.oxfordjournals.org/content/25/17/3389.short
Cited In (only showing first 100 items - show all)
- Numerical characteristics of word frequencies and their application to dissimilarity measure for sequence comparison
- A coprocessor architecture for fast protein structure prediction
- SVM-based detection of distant protein structural relationships using pairwise probabilistic suffix trees
- Unraveling the nature of the segmentation clock: Intrinsic disorder of clock proteins and their interaction map
- Comparative analysis of protein primary sequences with graph energy
- ECS: an automatic enzyme classifier based on functional domain composition
- A methanogen hosted the origin of the genetic code
- A scheme for multiple sequence alignment optimization -- an improvement based on family representative mechanics features
- Fine-grained parallel RNA secondary structure prediction using SCFGs on FPGA
- An \textit{in silico} exploration of the neutral network in protein sequence space
- A method for discovering transmembrane beta-barrel proteins in Gram-negative bacterial proteomes
- A feature vector integration approach for a generalized support vector machine pairwise homology algorithm
- In silico analyses of a new group of fungal and plant RecQ4-homologous proteins
- Structuring of the genetic code took place at acidic pH
- The evolution of the genetic code took place in an anaerobic environment
- Power analysis of database search using multiple scoring matrices
- Cooperative ``folding transition in the sequence space facilitates function-driven evolution of protein families
- Comparative protein structure modeling in genomics
- TMBETADISC-RBF: discrimination of \(\beta\)-barrel membrane proteins using RBF networks and PSSM profiles
- Analyzing functional similarity of protein sequences with discrete wavelet transform
- Identify Gram-negative bacterial secreted protein types by incorporating different modes of PSSM into Chou's general PseAAC via Kullback-Leibler divergence
- Prediction of protein interaction hot spots using rough set-based multiple criteria linear programming
- Sequence alignment for masquerade detection
- Whole-genome prokaryotic clustering based on gene lengths
- Towards hardness of approximation for polynomial time problems
- Non-linear models based on simple topological indices to identify RNase III protein members
- Protein domain hierarchy Gibbs sampling strategies
- Fine tuned exploration of evolutionary relationships within the protein universe
- Evolutionary decision rules for predicting protein contact maps
- Evidence theoretic protein fold classification based on the concept of hyperfold
- Convex hull analysis of evolutionary and phylogenetic relationships between biological groups
- Estimating the Gumbel scale parameter for local alignment of random sequences by importance sampling with stopping times
- SVM-BALSA: Remote homology detection based on Bayesian sequence alignment
- Bioinformatics. Volume II: structure, function, and applications
- ProTranslator
- ASTRAL-Pro
- Protein fold recognition by alignment of amino acid residues using kernelized dynamic time warping
- Species specific amino acid sequence-protein local structure relationships: an analysis in the light of a structural alphabet
- SVM-Prot
- Pattern-constrained multiple polypeptide sequence alignment
- Identification and analysis of mammalian KLK6 orthologue genes for prediction of physiological substrates
- Shuffling biological sequences with motif constraints
- Subsequence-based feature map for protein function classification
- Prediction of small, noncoding RNAs in bacteria using heterogeneous data
- PSSM-Suc: accurately predicting succinylation using position specific scoring matrix into bigram for feature extraction
- ProTranslator: zero-shot protein function prediction using textual description
- Mathematical chemistry illustrations: a personal view of less known results
- Correlation between sequence, structure and function for trisporoid processing proteins in the model zygomycete \textit{Mucor mucedo}
- Comparative genomics study of \textit{Salmonella Typhimurium} LT2 for the identification of putative therapeutic candidates
- Probing the protein space for extending the detection of weak homology folds
- DRESS: dimensionality reduction for efficient sequence search
- \textit{In silico} analysis of \textit{plasmodium falciparum} CDPK5 protein through molecular modeling, docking and dynamics
- MFSC: multi-voting based feature selection for classification of Golgi proteins by adopting the general form of Chou's PseAAC components
- Prediction of RNA-protein interactions by combining deep convolutional neural network with feature selection ensemble method
- In silico analysis of antibody triggering biofilm associated protein in \textit{Acinetobacter baumannii}
- iPHLoc-ES: identification of bacteriophage protein locations using evolutionary and structural features
- eXist
- IntelliGEN
- BioGRID
- MultiProt
- GeneGrid
- COSMOS
- SVMlight
- svmPRAT
- MrBayes
- MAFFT
- BioHEL
- tRNAscan-SE
- BLAST++
- Gbtk
- CAP3
- ScalaBLAST
- Cell-PLoc
- Soap
- MEGA
- RAPTOR
- SSAP
- AutoDock
- CSF4
- FASTA
- GridBlast
- mpiBLAST
- PackageBLAST
- PyMOL
- bioperl
- HMMER
- Chimera
- Cluster-C
- EMBOSS
- JIGSAW
- BOMP
- PRED-TMBB
- PSIPRED
- PROFtmb
- Psortb
- 3DCoffee
- TMBpro
- TMB-Hunt
- ClustalW
- DIALIGN
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