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Deep neural learning based protein function prediction ⋮ On the entropy of protein families ⋮ Influence of the feedback loops in the \textit{trp} operon of \textit{B. subtilis} on the system dynamic response and noise amplitude ⋮ Sequence graph transform (SGT): a feature embedding function for sequence data mining ⋮ SubChlo: predicting protein subchloroplast locations with pseudo-amino acid composition and the evidence-theoretic \(K\)-nearest neighbor (ET-KNN) algorithm ⋮ pSuc-Lys: predict lysine succinylation sites in proteins with PseAAC and ensemble random forest approach ⋮ Sequence-based prediction of protein-protein interaction sites with L1-logreg classifier ⋮ Unraveling the nature of the segmentation clock: Intrinsic disorder of clock proteins and their interaction map ⋮ Unnamed Item ⋮ An isotope dilution model for partitioning of phenylalanine and tyrosine uptake by the liver of lactating dairy cows ⋮ Springer Handbook of Bio-/Neuroinformatics ⋮ A Bayesian hierarchical model for identifying significant polygenic effects while controlling for confounding and repeated measures ⋮ Naïve Bayes classifier with feature selection to identify phage virion proteins ⋮ Unnamed Item ⋮ Effect of example weights on prediction of protein-protein interactions ⋮ Link test -- a statistical method for finding prostate cancer biomarkers ⋮ Max-min distance nonnegative matrix factorization ⋮ Spreading mechanics and differentiation of astrocytes during retinal development ⋮ Detection boundary and higher criticism approach for rare and weak genetic effects ⋮ Predicting protein sub-Golgi locations by combining functional domain enrichment scores with pseudo-amino acid compositions ⋮ Algorithms for learning parsimonious context trees ⋮ Computational identification of Shenshao Ningxin Yin as an effective treatment for novel coronavirus infection (COVID-19) with myocarditis ⋮ An efficient strategy for identifying essential proteins based on homology, subcellular location and protein-protein interaction information ⋮ Predicting deleterious non-synonymous single nucleotide polymorphisms in signal peptides based on hybrid sequence attributes ⋮ BlaPred: predicting and classifying \(\beta\)-lactamase using a 3-tier prediction system via Chou's general PseAAC ⋮ Identify Gram-negative bacterial secreted protein types by incorporating different modes of PSSM into Chou's general PseAAC via Kullback-Leibler divergence ⋮ Unnamed Item ⋮ Unnamed Item ⋮ \textit{In silico} analysis of \textit{plasmodium falciparum} CDPK5 protein through molecular modeling, docking and dynamics ⋮ Predicting the ligand-binding properties of \textit{Borrelia burgdorferi} s.s. Bmp proteins in light of the conserved features of related \textit{Borrelia} proteins ⋮ A new class of metrics for learning on real-valued and structured data ⋮ Gene regulatory networks. Methods and protocols ⋮ Knowledge-based computational mutagenesis for predicting the disease potential of human non-synonymous single nucleotide polymorphisms ⋮ A neutral evolution test derived from a theoretical amino acid substitution model ⋮ Data Management and Query Processing in Semantic Web Databases ⋮ An Accelerated Computational Approach in Proteomics ⋮ Fundamentals of bioinformatics and computational biology. Methods and exercises in MATLAB ⋮ ECS: an automatic enzyme classifier based on functional domain composition ⋮ Prediction of Carbohydrate-Binding Proteins from Sequences Using Support Vector Machines ⋮ ModEnzA: Accurate Identification of Metabolic Enzymes Using Function Specific Profile HMMs with Optimised Discrimination Threshold and Modified Emission Probabilities ⋮ Research in Computational Molecular Biology ⋮ Dforml(KNN)-PseAAC: detecting formylation sites from protein sequences using K-nearest neighbor algorithm via Chou's 5-step rule and pseudo components ⋮ A large-scale assessment of exact lumping of quantitative models in the biomodels repository ⋮ Bioinformatics. Volume I. Data, sequence analysis, and evolution ⋮ Highly accurate prediction of protein self-interactions by incorporating the average block and PSSM information into the general PseAAC ⋮ Bi-PSSM: position specific scoring matrix based intelligent computational model for identification of mycobacterial membrane proteins ⋮ iPHLoc-ES: identification of bacteriophage protein locations using evolutionary and structural features ⋮ Cavity detection and matching for binding site recognition ⋮ Predicting ion channels and their types by the dipeptide mode of pseudo amino acid composition ⋮ iProLINK: an integrated protein resource for literature mining ⋮ Quotient lenses ⋮ The iProClass integrated database for protein functional analysis ⋮ Fatgraph models of proteins ⋮ Protein-protein interactions can be predicted using coiled coil co-evolution patterns ⋮ The combinatorics of overlapping genes ⋮ Fixed-size determinantal point processes sampling for species phylogeny ⋮ Two-intermediate model to characterize the structure of fast-folding proteins ⋮ Predicting mycobacterial proteins subcellular locations by incorporating pseudo-average chemical shift into the general form of Chou's pseudo amino acid composition ⋮ GeneGrid: Architecture, implementation and application ⋮ A comparative computational analysis of protein sequences and literature mining classify `orphan' neurotransmitter transporters ⋮ Metabolic networks are NP-hard to reconstruct ⋮ Nonlinear effects in evolution - an \textit{ab initio} study: a model in which the classical theory of evolution occurs as a special case ⋮ On the retention of gene duplicates prone to dominant deleterious mutations ⋮ It's about time: signal recognition in staged models of protein translocation ⋮ Global multivariate model learning from hierarchically correlated data ⋮ Large-scale local causal inference of gene regulatory relationships ⋮ Highly Bi-Connected Subgraphs for Computational Protein Function Annotation ⋮ Sequence analysis and modern C++. The creation of the SeqAn3 bioinformatics library ⋮ Maintenance of datalog materialisations revisited ⋮ A novel extended Pareto optimality consensus model for predicting essential proteins ⋮ Revisiting chameleon sequences in the protein data bank ⋮ Prediction of presynaptic and postsynaptic neurotoxins based on feature extraction ⋮ TYLER, a fast method that accurately predicts cyclin-dependent proteins by using computation-based motifs and sequence-derived features ⋮ Prediction of \(\beta\)-lactamase and its class by Chou's pseudo-amino acid composition and support vector machine ⋮ Iterative SE(3)-transformers
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