Cited in
(only showing first 100 items - show all)- iPHLoc-ES: identification of bacteriophage protein locations using evolutionary and structural features
- Gene regulatory networks. Methods and protocols
- Detection boundary and higher criticism approach for rare and weak genetic effects
- Cavity detection and matching for binding site recognition
- Protein-protein interactions can be predicted using coiled coil co-evolution patterns
- A new class of metrics for learning on real-valued and structured data
- A novel extended Pareto optimality consensus model for predicting essential proteins
- iProLINK: an integrated protein resource for literature mining
- GeneGrid: Architecture, implementation and application
- A neutral evolution test derived from a theoretical amino acid substitution model
- Naïve Bayes classifier with feature selection to identify phage virion proteins
- Dforml(KNN)-PseAAC: detecting formylation sites from protein sequences using K-nearest neighbor algorithm via Chou's 5-step rule and pseudo components
- Revisiting chameleon sequences in the protein data bank
- Sequence-based prediction of protein-protein interaction sites with L1-logreg classifier
- A large-scale assessment of exact lumping of quantitative models in the biomodels repository
- Iterative SE(3)-transformers
- Sequence graph transform (SGT): a feature embedding function for sequence data mining
- Unraveling the nature of the segmentation clock: Intrinsic disorder of clock proteins and their interaction map
- Springer Handbook of Bio-/Neuroinformatics
- Quotient lenses
- ECS: an automatic enzyme classifier based on functional domain composition
- Bi-PSSM: position specific scoring matrix based intelligent computational model for identification of mycobacterial membrane proteins
- Deep neural learning based protein function prediction
- On the entropy of protein families
- Influence of the feedback loops in the \textit{trp} operon of \textit{B. subtilis} on the system dynamic response and noise amplitude
- Maintenance of datalog materialisations revisited
- Fixed-size determinantal point processes sampling for species phylogeny
- An isotope dilution model for partitioning of phenylalanine and tyrosine uptake by the liver of lactating dairy cows
- Fatgraph models of proteins
- Predicting deleterious non-synonymous single nucleotide polymorphisms in signal peptides based on hybrid sequence attributes
- Highly accurate prediction of protein self-interactions by incorporating the average block and PSSM information into the general PseAAC
- Nonlinear effects in evolution - an \textit{ab initio} study: a model in which the classical theory of evolution occurs as a special case
- It's about time: signal recognition in staged models of protein translocation
- Effect of example weights on prediction of protein-protein interactions
- Link test -- a statistical method for finding prostate cancer biomarkers
- Max-min distance nonnegative matrix factorization
- eXist
- iProLINK
- BioGRID
- GeneGrid
- Rfam
- Biopython
- EDISON
- MetaCyc
- Cytoscape
- Taverna
- Spikenet
- AutoDock Vina
- FASTA
- mpiBLAST
- TAX
- bioperl
- HMMER
- EMBOSS
- GOstat
- Sylamer
- ClustalW
- Pengines
- Naccess
- SURFNET
- SMART
- BLAST
- MUSCLE
- CODA
- BioGRID
- BiNGO
- CLENCH
- iPARTS
- KEGG
- JSBML
- Jstacs
- Affymetrix
- LUBM
- Reactome
- GPTIPS
- MALDIquant
- CDK
- MySQL
- AUTO-MUTE
- Cd-hit
- HHblits
- PISCES
- ELM
- Porter
- Prodigal
- PlantTFDB
- BiGG
- BacSim
- GeneMark
- GOtcha
- INCLUSive
- ArchPRED
- FIMO
- EasyGene
- HotKnots
- Bambino
- BioOptimizer
- My5C
- eXiT*CBR
- InterProScan
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