Highly accurate prediction of protein self-interactions by incorporating the average block and PSSM information into the general PseAAC

DOI10.1016/J.JTBI.2017.08.009MaRDI QIDQ1747718zbMATH OpenOpenAlexWikidataFDO

Authors Jing-Xuan Zhai, Tian-Jie Cao, Ji-Yong An, Yong-Tao Bian

Publication date 27 April 2018

Published in Journal of Theoretical Biology (Search for Journal in Brave)

Full work available at URL https://doi.org/10.1016/j.jtbi.2017.08.009

zbMATH Keywords

position-specific scoring matrixprotein sequencesrelevance vector machine

Mathematics Subject Classification ID

Biochemistry, molecular biology (92C40)

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Cites work

• 10.1162/15324430152748236
• A study of entropy/clarity of genetic sequences using metric spaces and fuzzy sets
• Gram-positive and Gram-negative protein subcellular localization by incorporating evolutionary-based descriptors into Chou's general PseAAC
• iPTM-mLys
• Some remarks on protein attribute prediction and pseudo amino acid composition

Cited in

(2)

• Predicting protein submitochondrial locations by incorporating the pseudo-position specific scoring matrix into the general Chou's pseudo-amino acid composition
• Predicting protein-protein interactions by fusing various Chou's pseudo components and using wavelet denoising approach

Describes a project that uses

Uses Software

• iPTM-mLys
• iPro54-PseKNC
• iPPI-Esml
• iSNO-PseAAC
• iPhos-PseEn
• iPhos-PseEvo
• RVMAB
• iRNA-AI
• iATC-mHyb
• iRNAm5C-PseDNC
• iPreny-PseAAC
• iCar-PseCp
• iHyd-PseCp
• UniProt
• Pse-in-One
• iSNO-AAPair
• Pse-analysis
• iRNA-PseColl
• iRSpot-EL
• 2L-piRNA
• LIBSVM
• iRSpot-PseDNC
• Unb-DPC
• OOgenesis_Pred

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