iPPI-PseAAC(CGR): identify protein-protein interactions by incorporating chaos game representation into PseAAC
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Publication:1716822
DOI10.1016/j.jtbi.2018.10.021zbMath1406.92189OpenAlexW2897596315WikidataQ57480510 ScholiaQ57480510MaRDI QIDQ1716822
Xuan Xiao, Kuo-Chen Chou, Xiao-Yan Li, Wang-Ren Qiu, Jian-Hua Jia
Publication date: 5 February 2019
Published in: Journal of Theoretical Biology (Search for Journal in Brave)
Full work available at URL: https://doi.org/10.1016/j.jtbi.2018.10.021
random forestscross validation\textit{Saccharomyces cerevisiae}pseudo amino acid compositionchaos game representation\textit{Helicobacter pylori}web-server
Applications of statistics to biology and medical sciences; meta analysis (62P10) Learning and adaptive systems in artificial intelligence (68T05) Biochemistry, molecular biology (92C40) Protein sequences, DNA sequences (92D20) Computational methods for problems pertaining to biology (92-08)
Related Items (7)
The preliminary efficacy evaluation of the CTLA-4-ig treatment against lupus nephritis through \textit{in-silico} analyses ⋮ pSSbond-PseAAC: prediction of disulfide bonding sites by integration of PseAAC and statistical moments ⋮ Analysis and prediction of animal toxins by various Chou's pseudo components and reduced amino acid compositions ⋮ Predicting protein-protein interactions by fusing various Chou's pseudo components and using wavelet denoising approach ⋮ iRNA-PseKNC(2methyl): identify RNA 2'-O-methylation sites by convolution neural network and Chou's pseudo components ⋮ Identifying N\(^6\)-methyladenosine sites using extreme gradient boosting system optimized by particle swarm optimizer ⋮ SPrenylC-PseAAC: a sequence-based model developed via Chou's 5-steps rule and general PseAAC for identifying S-prenylation sites in proteins
Uses Software
- LogitBoost
- PredLactamase
- iNuc-PseKNC
- pSuc-Lys
- iEnhancer-2L
- 2D-MH
- propy
- Pse-in-One
- iDNA-Prot
- iPro54-PseKNC
- iRSpot-TNCPseAAC
- iPPI-Esml
- iDrug-Target
- Prnam-PC
- iDNA-Methyl
- iMiRNA-PseDPC
- iPPBS-Opt
- iSuc-PseOpt
- PseKNC
- iRSpot-PseDNC
- iSS-PseDNC
- iRNA-Methyl
- iCTX-Type
- AFP-Pred
- RSARF
- iMethyl-PseAAC
- iSNO-PseAAC
- iSNO-AAPair
- iTIS-PseTNC
- iNitro-Tyr
- iNuc-PhysChem
- iPTM-mLys
- pSumo-CD
- iACP
- iCar-PseCp
- iHyd-PseCp
- iPhos-PseEvo
- iPhos-PseEn
- iOri-Human
- iRNA-AI
- pLoc-mAnimal
- pLoc-mVirus
- pLoc-mEuk
- iRNA-PseColl
- iATC-mHyb
- iRNA-2methyl
- iRNAm5C-PseDNC
- POSSUM
- iPreny-PseAAC
- DPP-PseAAC
- iRSpot-EL
- iPromoter-2L
- PREvaIL
- OOgenesis_Pred
- pLoc-mGneg
- pLoc-mPlant
- iHSP-PseRAAAC
- iKcr-PseEns
- iROS-gPseKNC
- iProt-Sub
- iRNA-PseU
- iRNA-3typeA
- pLoc-mHum
- pLoc_bal-mHum
- iDNA6mA-PseKNC
- iPPI-PseAAC
- Quokka
- 2L-piRNA
- iEnhancer-EL
- iRO-3wPseKNC
- pLoc_bal-mGpos
- iHyd-PseAAC
- iRSpot-Pse6NC
- BlaPred
- iFeature
- pLoc_bal-mGneg
- iLoc-lncRNA
- PROSPERous
- SMOTE
- FoldRate
Cites Work
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- Predicting plant protein subcellular multi-localization by Chou's PseAAC formulation based multi-label homolog knowledge transfer learning
- pSuc-Lys: predict lysine succinylation sites in proteins with PseAAC and ensemble random forest approach
- Prediction of protein structure classes by incorporating different protein descriptors into general Chou's pseudo amino acid composition
- Use of fuzzy clustering technique and matrices to classify amino acids and its impact to Chou's pseudo amino acid composition
- A novel feature representation method based on Chou's pseudo amino acid composition for protein structural class prediction
- IMem-2LSAAC: a two-level model for discrimination of membrane proteins and their types by extending the notion of SAAC into Chou's pseudo amino acid composition
- Some remarks on protein attribute prediction and pseudo amino acid composition
- BlaPred: predicting and classifying \(\beta\)-lactamase using a 3-tier prediction system via Chou's general PseAAC
- pLoc\_bal-mGneg: predict subcellular localization of Gram-negative bacterial proteins by quasi-balancing training dataset and general PseAAC
- Predicting structural classes of proteins by incorporating their global and local physicochemical and conformational properties into general Chou's PseAAC
- iMethyl-STTNC: identification of N\(^6\)-methyladenosine sites by extending the idea of SAAC into Chou's PseAAC to formulate RNA sequences
- Using the concept of Chou's pseudo amino acid composition for risk type prediction of human papillomaviruses
- 2D-MH: a web-server for generating graphic representation of protein sequences based on the physicochemical properties of their constituent amino acids
- Prediction of protein subcellular localization with oversampling approach and Chou's general PseAAC
- Prediction of GABA\(_{\mathrm A}\) receptor proteins using the concept of Chou's pseudo-amino acid composition and support vector machine
- The disposition of the LZCC protein residues in wenxiang diagram provides new insights into the protein-protein interaction mechanism
- Using LogitBoost classifier to predict protein structural classes
- An application of gene comparative image for predicting the effect on replication ratio by HBV virus gene missense mutation
- Using Chou's amphiphilic pseudo-amino acid composition and support vector machine for prediction of enzyme subfamily classes
- Prediction of \(\beta\)-lactamase and its class by Chou's pseudo-amino acid composition and support vector machine
- Chou's pseudo amino acid composition improves sequence-based antifreeze protein prediction
- Predicting anticancer peptides with Chou's pseudo amino acid composition and investigating their mutagenicity via ames test
- Bio-entity network for analysis of protein-protein interaction networks
- Random forests
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