pSSbond-PseAAC: prediction of disulfide bonding sites by integration of PseAAC and statistical moments

DOI10.1016/j.jtbi.2018.12.015zbMath1406.92460OpenAlexW2905397045WikidataQ90503965 ScholiaQ90503965MaRDI QIDQ1717058

Nouman Rasool, Yaser Daanial Khan, Kuo-Chen Chou, Waqar Hussain, Mehreen Jamil, Sher Afzal Khan

Publication date: 6 February 2019

Published in: Journal of Theoretical Biology (Search for Journal in Brave)

Full work available at URL: https://doi.org/10.1016/j.jtbi.2018.12.015

zbMATH Keywords

neural networks10-fold cross validation5-step ruleposition relative features

Mathematics Subject Classification ID

Classification and discrimination; cluster analysis (statistical aspects) (62H30) Applications of statistics to biology and medical sciences; meta analysis (62P10) Learning and adaptive systems in artificial intelligence (68T05) Protein sequences, DNA sequences (92D20)

Related Items

SPrenylC-PseAAC: a sequence-based model developed via Chou's 5-steps rule and general PseAAC for identifying S-prenylation sites in proteins

Uses Software

• pSuc-Lys
• iEnhancer-2L
• propy
• Pse-in-One
• iDNA-Prot
• iPro54-PseKNC
• Prnam-PC
• iDHS-EL
• iSuc-PseOpt
• iRSpot-PseDNC
• iMethyl-PseAAC
• iSNO-AAPair
• iPTM-mLys
• iPhos-PseEvo
• iRNA-AI
• pLoc-mAnimal
• pLoc-mVirus
• pLoc-mEuk
• iRNA-PseColl
• iATC-mHyb
• iRNAm5C-PseDNC
• iPreny-PseAAC
• DPP-PseAAC
• iRSpot-EL
• iPromoter-2L
• pLoc-mGneg
• pLoc-mPlant
• iKcr-PseEns
• iProt-Sub
• iRNA-PseU
• pLoc_bal-mHum
• iPPI-PseAAC
• 2L-piRNA
• pLoc_bal-mGpos
• iHyd-PseAAC
• BlaPred
• pLoc_bal-mGneg

Cites Work

• pSuc-Lys: predict lysine succinylation sites in proteins with PseAAC and ensemble random forest approach
• Naïve Bayes classifier with feature selection to identify phage virion proteins
• Predicting protein submitochondrial locations by incorporating the pseudo-position specific scoring matrix into the general Chou's pseudo-amino acid composition
• Identifying 5-methylcytosine sites in RNA sequence using composite encoding feature into Chou's PseKNC
• IMem-2LSAAC: a two-level model for discrimination of membrane proteins and their types by extending the notion of SAAC into Chou's pseudo amino acid composition
• Some remarks on protein attribute prediction and pseudo amino acid composition
• BlaPred: predicting and classifying \(\beta\)-lactamase using a 3-tier prediction system via Chou's general PseAAC
• Predicting apoptosis protein subcellular localization by integrating auto-cross correlation and PSSM into Chou's PseAAC
• pLoc\_bal-mGneg: predict subcellular localization of Gram-negative bacterial proteins by quasi-balancing training dataset and general PseAAC
• Identify Gram-negative bacterial secreted protein types by incorporating different modes of PSSM into Chou's general PseAAC via Kullback-Leibler divergence
• Predicting structural classes of proteins by incorporating their global and local physicochemical and conformational properties into general Chou's PseAAC
• iMethyl-STTNC: identification of N\(^6\)-methyladenosine sites by extending the idea of SAAC into Chou's PseAAC to formulate RNA sequences
• Predicting membrane protein types by incorporating a novel feature set into Chou's general PseAAC
• Analysis and prediction of ion channel inhibitors by using feature selection and Chou's general pseudo amino acid composition
• iPPI-PseAAC(CGR): identify protein-protein interactions by incorporating chaos game representation into PseAAC
• Prediction of protein subcellular localization with oversampling approach and Chou's general PseAAC
• Methods to predict protein spatial structure