pLoc\_bal-mGneg: predict subcellular localization of Gram-negative bacterial proteins by quasi-balancing training dataset and general PseAAC
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Publication:1712835
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Cites work
- A novel feature representation method based on Chou's pseudo amino acid composition for protein structural class prediction
- Chou's pseudo amino acid composition improves sequence-based antifreeze protein prediction
- Classification of membrane protein types using voting feature interval in combination with Chou's pseudo amino acid composition
- Gneg-mPLoc: a top-down strategy to enhance the quality of predicting subcellular localization of Gram-negative bacterial proteins
- GOASVM: a subcellular location predictor by incorporating term-frequency gene ontology into the general form of Chou's pseudo-amino acid composition
- Gram-positive and Gram-negative protein subcellular localization by incorporating evolutionary-based descriptors into Chou's general PseAAC
- scientific article; zbMATH DE number 1753143 (Why is no real title available?)
- IMem-2LSAAC: a two-level model for discrimination of membrane proteins and their types by extending the notion of SAAC into Chou's pseudo amino acid composition
- Predicting anticancer peptides with Chou's pseudo amino acid composition and investigating their mutagenicity via ames test
- Predicting mycobacterial proteins subcellular locations by incorporating pseudo-average chemical shift into the general form of Chou's pseudo amino acid composition
- Predicting plant protein subcellular multi-localization by Chou's PseAAC formulation based multi-label homolog knowledge transfer learning
- Predicting protein structural classes with pseudo amino acid composition: an approach using geometric moments of cellular automaton image
- Prediction of \(\beta\)-lactamase and its class by Chou's pseudo-amino acid composition and support vector machine
- Prediction of GABA\(_{\mathrm A}\) receptor proteins using the concept of Chou's pseudo-amino acid composition and support vector machine
- Prediction of protein structure classes by incorporating different protein descriptors into general Chou's pseudo amino acid composition
- Prediction of protein subcellular localization with oversampling approach and Chou's general PseAAC
- pSuc-Lys: predict lysine succinylation sites in proteins with PseAAC and ensemble random forest approach
- Some remarks on protein attribute prediction and pseudo amino acid composition
- Use of fuzzy clustering technique and matrices to classify amino acids and its impact to Chou's pseudo amino acid composition
- Using Chou's amphiphilic pseudo-amino acid composition and support vector machine for prediction of enzyme subfamily classes
- Using LogitBoost classifier to predict protein structural classes
- Using the concept of Chou's pseudo amino acid composition for risk type prediction of human papillomaviruses
Cited in
(24)- Predicting apoptosis protein subcellular localization by integrating auto-cross correlation and PSSM into Chou's PseAAC
- iMethyl-STTNC: identification of N\(^6\)-methyladenosine sites by extending the idea of SAAC into Chou's PseAAC to formulate RNA sequences
- Gneg-mPLoc: a top-down strategy to enhance the quality of predicting subcellular localization of Gram-negative bacterial proteins
- Effective DNA binding protein prediction by using key features via Chou's general PseAAC
- iPPI-PseAAC(CGR): identify protein-protein interactions by incorporating chaos game representation into PseAAC
- Fu-SulfPred: identification of protein S-sulfenylation sites by fusing forests via Chou's general PseAAC
- pSSbond-PseAAC: prediction of disulfide bonding sites by integration of PseAAC and statistical moments
- MFSC: multi-voting based feature selection for classification of Golgi proteins by adopting the general form of Chou's PseAAC components
- Analysis and prediction of animal toxins by various Chou's pseudo components and reduced amino acid compositions
- Predicting protein-protein interactions by fusing various Chou's pseudo components and using wavelet denoising approach
- iRNA-PseKNC(2methyl): identify RNA 2'-O-methylation sites by convolution neural network and Chou's pseudo components
- SecretP: identifying bacterial secreted proteins by fusing new features into Chou's pseudo-amino acid composition
- SPrenylC-PseAAC: a sequence-based model developed via Chou's 5-steps rule and general PseAAC for identifying S-prenylation sites in proteins
- Dforml(KNN)-PseAAC: detecting formylation sites from protein sequences using K-nearest neighbor algorithm via Chou's 5-step rule and pseudo components
- Predicting mycobacterial proteins subcellular locations by incorporating pseudo-average chemical shift into the general form of Chou's pseudo amino acid composition
- \textbf{iLoc-Virus}: a multi-label learning classifier for identifying the subcellular localization of virus proteins with both single and multiple sites
- Predicting S-nitrosylation proteins and sites by fusing multiple features
- Feature extraction by statistical contact potentials and wavelet transform for predicting subcellular localizations in gram negative bacterial proteins
- Gram-positive and Gram-negative protein subcellular localization by incorporating evolutionary-based descriptors into Chou's general PseAAC
- The preliminary efficacy evaluation of the CTLA-4-ig treatment against lupus nephritis through \textit{in-silico} analyses
- Prediction of antioxidant proteins by incorporating statistical moments based features into Chou's PseAAC
- Predicting Gram-positive bacterial protein subcellular localization based on localization motifs
- pLoc_bal-mGneg
- Multiscale modeling approach to assess the impact of antibiotic treatment for COVID-19 on MRSA transmission and alternative immunotherapy treatment options
Describes a project that uses
Uses Software
- iHyd-PseCp
- Prnam-PC
- Memtype-2L
- PredLactamase
- propy
- iSuc-PseOpt
- iLoc-Animal
- iPPBS-Opt
- iSNO-AAPair
- iTIS-PseTNC
- iNitro-Tyr
- iNuc-PhysChem
- Pse-analysis
- iRNA-PseColl
- iRSpot-EL
- iHSP-PseRAAAC
- pLoc-mGneg
- iNR-PhysChem
- iDNA6mA-PseKNC
- Quokka
- 2L-piRNA
- iEnhancer-EL
- iRO-3wPseKNC
- SMOTE
- pSuc-Lys
- PseKNC
- iRSpot-PseDNC
- Unb-DPC
- OOgenesis_Pred
- PREvaIL
- iNuc-STNC
- iFeature
- PROSPERous
- iCar-PseCp
- iPTM-mLys
- pSumo-CD
- iACP
- iDNA-Prot
- pLoc-mHum
- LogitBoost
- Cell-PLoc
- Psortb
- iEnhancer-2L
- iPro54-PseKNC
- iRSpot-TNCPseAAC
- iPPI-Esml
- iDrug-Target
- iDNA-Methyl
- GOASVM
- iSS-PseDNC
- iRNA-Methyl
- iCTX-Type
- AFP-Pred
- iSNO-PseAAC
- iPhos-PseEn
- iRNA-AI
- pLoc-mAnimal
- iATC-mHyb
- iRNAm5C-PseDNC
- POSSUM
- iPromoter-2L
- iKcr-PseEns
- Gneg-mPLoc
- iProt-Sub
- iRNA-PseU
- iRNA-3typeA
- iRSpot-Pse6NC
- WoLF PSORT
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