Memtype-2L

swMATH16472MaRDI QIDQ28342FDOQ28342

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Official website: http://www.csbio.sjtu.edu.cn/bioinf/MemType/

Cited In (92)

• Molecular modeling of BAD complex resided in a mitochondrion integrating glycolysis and apoptosis
• Bi-PSSM: position specific scoring matrix based intelligent computational model for identification of mycobacterial membrane proteins
• Prediction of antioxidant proteins by incorporating statistical moments based features into Chou's PseAAC
• Comparative genomics study of \textit{Salmonella Typhimurium} LT2 for the identification of putative therapeutic candidates
• MFSC: multi-voting based feature selection for classification of Golgi proteins by adopting the general form of Chou's PseAAC components
• A simple method to analyze the similarity of biological sequences based on the fuzzy theory
• Protein classification using texture descriptors extracted from the protein backbone image
• MemHyb: predicting membrane protein types by hybridizing SAAC and PSSM
• A study of entropy/clarity of genetic sequences using metric spaces and fuzzy sets
• NL MIND-BEST: a web server for ligands and proteins discovery -- theoretic-experimental study of proteins of \textit{Giardia lamblia} and new compounds active against \textit{Plasmodium falciparum}
• Alignment free comparison: similarity distribution between the DNA primary sequences based on the shortest absent word
• \(\gamma\)-turn types prediction in proteins using the two-stage hybrid neural discriminant model
• Predicting protein submitochondrial locations by incorporating the pseudo-position specific scoring matrix into the general Chou's pseudo-amino acid composition
• Predicting protein subchloroplast locations with both single and multiple sites via three different modes of Chou's pseudo amino acid compositions
• Geometry preserving projections algorithm for predicting membrane protein types
• Prediction of protein structural classes by recurrence quantification analysis based on chaos game representation
• Annotating the protein-RNA interaction sites in proteins using evolutionary information and protein backbone structure
• IMem-2LSAAC: a two-level model for discrimination of membrane proteins and their types by extending the notion of SAAC into Chou's pseudo amino acid composition
• Predicting membrane protein types by incorporating a novel feature set into Chou's general PseAAC
• Classification of membrane protein types using voting feature interval in combination with Chou's pseudo amino acid composition
• Some remarks on protein attribute prediction and pseudo amino acid composition
• Cell-PLoc
• TMB-Hunt
• Nuc-ploc
• PseAAC
• ProtIdent
• Porter
• PROFEAT
• PredGPI
• Use of fuzzy clustering technique and matrices to classify amino acids and its impact to Chou's pseudo amino acid composition
• HyperChem
• Euk-PLoc
• GPCR-2L
• iLoc-Gpos
• GPCR-GIA
• iLoc-Hum
• iLoc-Euk
• GPCRpred
• Plant-mPLoc
• Quat-2L
• QuatIdent
• SecretP
• Virus-ploc
• VGIchan
• iRSpot-GAEnsC
• MemHyb
• NRPSpredictor2
• Gneg-mPLoc
• Gpos-mPLoc
• GPCR-CA
• NL MIND-BEST
• AAindex
• Euk-mPLoc
• EzyPred
• Gpos-PLoc
• GNBSL
• HIVcleave
• Hum-mPLoc
• Hum-PLoc
• KNOTTIN
• MITOPRED
• PROMOTIF
• Signal-CF
• Signal-3L
• Bio-AIMS
• EpitopeViewer
• VaxiJen
• MARCH-INSIDE
• OCTOPUS
• RNAlign
• FoldRate
• MultiLoc
• VirulentPred
• Predicting DNA- and RNA-binding proteins from sequences with kernel methods
• Using the augmented Chou's pseudo amino acid composition for predicting protein submitochondria locations based on auto covariance approach
• Using the concept of Chou's pseudo amino acid composition for risk type prediction of human papillomaviruses
• The modified Mahalanobis discriminant for predicting outer membrane proteins by using Chou's pseudo amino acid composition
• Predicting membrane protein types by incorporating protein topology, domains, signal peptides, and physicochemical properties into the general form of Chou's pseudo amino acid composition
• pSLIP
• GenThreader
• High performance set of PseAAC and sequence based descriptors for protein classification
• The Burrows-Wheeler similarity distribution between biological sequences based on Burrows-Wheeler transform
• Protein fold recognition by alignment of amino acid residues using kernelized dynamic time warping
• Predicting ion channels and their types by the dipeptide mode of pseudo amino acid composition
• Application of density similarities to predict membrane protein types based on pseudo-amino acid composition
• A two-stage SVM method to predict membrane protein types by incorporating amino acid classifications and physicochemical properties into a general form of Chou's PseAAC
• Prediction of metastasis in advanced colorectal carcinomas using CGH data
• pLoc\_bal-mGneg: predict subcellular localization of Gram-negative bacterial proteins by quasi-balancing training dataset and general PseAAC
• Multiclass cancer classification by support vector machines with class-wise optimized genes and probability estimates
• A protein fold classifier formed by fusing different modes of pseudo amino acid composition via PSSM
• Predicting mycobacterial proteins subcellular locations by incorporating pseudo-average chemical shift into the general form of Chou's pseudo amino acid composition
• Prediction protein structural classes with pseudo-amino acid composition: approximate entropy and hydrophobicity pattern

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