Using the concept of Chou's pseudo amino acid composition for risk type prediction of human papillomaviruses
From MaRDI portal
Publication:1715312
DOI10.1016/J.JTBI.2009.11.016zbMATH Open1406.92455OpenAlexW2003613304WikidataQ35016043 ScholiaQ35016043MaRDI QIDQ1715312FDOQ1715312
Sasan Mohsenzadeh, Hassan Mohabatkar, Maryam Esmaeili
Publication date: 4 February 2019
Published in: Journal of Theoretical Biology (Search for Journal in Brave)
Full work available at URL: https://doi.org/10.1016/j.jtbi.2009.11.016
Recommendations
- Prediction of high-risk types of human papillomaviruses using statistical model of protein ``sequence space
- Using pseudo-amino acid composition and support vector machine to predict protein structural class
- Predicting protein structural classes with pseudo amino acid composition: an approach using geometric moments of cellular automaton image
- Predicting membrane protein types by fusing composite protein sequence features into pseudo amino acid composition
- Predicting anticancer peptides with Chou's pseudo amino acid composition and investigating their mutagenicity via ames test
Applications of statistics to biology and medical sciences; meta analysis (62P10) Protein sequences, DNA sequences (92D20)
Cites Work
- Comparing the Areas under Two or More Correlated Receiver Operating Characteristic Curves: A Nonparametric Approach
- Predicting protein structural classes with pseudo amino acid composition: an approach using geometric moments of cellular automaton image
- Prediction protein structural classes with pseudo-amino acid composition: approximate entropy and hydrophobicity pattern
- Prediction of protein structural classes by recurrence quantification analysis based on chaos game representation
- Using stacked generalization to predict membrane protein types based on pseudo-amino acid composition
- Predicting protein structural class based on multi-features fusion
Cited In (46)
- MemHyb: predicting membrane protein types by hybridizing SAAC and PSSM
- Prediction of protein-protein interaction sites using patch-based residue characterization
- iCDI-PseFpt: identify the channel-drug interaction in cellular networking with PseAAC and molecular fingerprints
- A Hooke's law-based approach to protein folding rate
- Predicting protein subchloroplast locations with both single and multiple sites via three different modes of Chou's pseudo amino acid compositions
- Predicting plant protein subcellular multi-localization by Chou's PseAAC formulation based multi-label homolog knowledge transfer learning
- Elman RNN based classification of proteins sequences on account of their mutual information
- Comprehensive comparative analysis and identification of RNA-binding protein domains: multi-class classification and feature selection
- Efficacy of function specific 3D-motifs in enzyme classification according to their EC-numbers
- A QSPR-like model for multilocus genotype networks of \textit{Fasciola hepatica} in Northwest Spain
- Prediction of high-risk types of human papillomaviruses using statistical model of protein ``sequence space
- Linear regression model of short \(k\)-word: a similarity distance suitable for biological sequences with various lengths
- Identify five kinds of simple super-secondary structures with quadratic discriminant algorithm based on the chemical shifts
- Some remarks on protein attribute prediction and pseudo amino acid composition
- A new hybrid fractal algorithm for predicting thermophilic nucleotide sequences
- A segmented principal component analysis -- regression approach to QSAR study of peptides
- RFCRYS: sequence-based protein crystallization propensity prediction by means of random forest
- Interrogating noise in protein sequences from the perspective of protein-protein interactions prediction
- Data mining for DNA viruses with breast cancer, fibroadenoma, and normal mammary tissue
- A novel feature representation method based on Chou's pseudo amino acid composition for protein structural class prediction
- SecretP: identifying bacterial secreted proteins by fusing new features into Chou's pseudo-amino acid composition
- A feature extraction technique using bi-gram probabilities of position specific scoring matrix for protein fold recognition
- Predicting membrane protein types by incorporating protein topology, domains, signal peptides, and physicochemical properties into the general form of Chou's pseudo amino acid composition
- Prediction of GABA\(_{\mathrm A}\) receptor proteins using the concept of Chou's pseudo-amino acid composition and support vector machine
- High performance set of PseAAC and sequence based descriptors for protein classification
- Transmission of intra-cellular genetic information: a system proposal
- R3P-Loc: a compact multi-label predictor using ridge regression and random projection for protein subcellular localization
- Multi-kernel transfer learning based on Chou's PseAAC formulation for protein submitochondria localization
- Neural network and SVM classifiers accurately predict lipid binding proteins, irrespective of sequence homology
- Protein fold recognition by alignment of amino acid residues using kernelized dynamic time warping
- Predicting ion channels and their types by the dipeptide mode of pseudo amino acid composition
- Sequence-dependent prediction of recombination hotspots in \textit{Saccharomyces cerevisiae}
- Predicting anticancer peptides with Chou's pseudo amino acid composition and investigating their mutagenicity via ames test
- Chou's pseudo amino acid composition improves sequence-based antifreeze protein prediction
- Gram-positive and Gram-negative protein subcellular localization by incorporating evolutionary-based descriptors into Chou's general PseAAC
- Constructing a linear QSAR for some metabolizable drugs by human or pig flavin-containing monooxygenases using some molecular features selected by a genetic algorithm trained SVM
- A set of descriptors for identifying the protein-drug interaction in cellular networking
- Knowledge-based computational mutagenesis for predicting the disease potential of human non-synonymous single nucleotide polymorphisms
- Protein subcellular localization in human and hamster cell lines: employing local ternary patterns of fluorescence microscopy images
- pLoc\_bal-mGneg: predict subcellular localization of Gram-negative bacterial proteins by quasi-balancing training dataset and general PseAAC
- \textbf{iLoc-Virus}: a multi-label learning classifier for identifying the subcellular localization of virus proteins with both single and multiple sites
- Predicting mycobacterial proteins subcellular locations by incorporating pseudo-average chemical shift into the general form of Chou's pseudo amino acid composition
- A novel statistical measure for sequence comparison on the basis of \(k\)-word counts
- Characterization of structure-antioxidant activity relationship of peptides in free radical systems using QSAR models: key sequence positions and their amino acid properties
- Protein space: a natural method for realizing the nature of protein universe
- iPPI-PseAAC(CGR): identify protein-protein interactions by incorporating chaos game representation into PseAAC
Uses Software
This page was built for publication: Using the concept of Chou's pseudo amino acid composition for risk type prediction of human papillomaviruses
Report a bug (only for logged in users!)Click here to report a bug for this page (MaRDI item Q1715312)
