Prediction of GABA\(_{\mathrm A}\) receptor proteins using the concept of Chou's pseudo-amino acid composition and support vector machine
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Publication:1783532
DOI10.1016/j.jtbi.2011.04.017zbMath1397.92215OpenAlexW2075176419WikidataQ34181833 ScholiaQ34181833MaRDI QIDQ1783532
Hassan Mohabatkar, Abolghasem Esmaeili, Majid Mohammad-Beigi
Publication date: 21 September 2018
Published in: Journal of Theoretical Biology (Search for Journal in Brave)
Full work available at URL: https://doi.org/10.1016/j.jtbi.2011.04.017
bioinformaticsMatthew's correlation coefficientminimum redundancy and maximum relevanceprotein family classification
Learning and adaptive systems in artificial intelligence (68T05) Biochemistry, molecular biology (92C40) Protein sequences, DNA sequences (92D20)
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Uses Software
Cites Work
- Unnamed Item
- Using the augmented Chou's pseudo amino acid composition for predicting protein submitochondria locations based on auto covariance approach
- A novel feature representation method based on Chou's pseudo amino acid composition for protein structural class prediction
- Using the concept of Chou's pseudo amino acid composition for risk type prediction of human papillomaviruses
- SecretP: identifying bacterial secreted proteins by fusing new features into Chou's pseudo-amino acid composition
- The modified Mahalanobis discriminant for predicting outer membrane proteins by using Chou's pseudo amino acid composition
- Using Chou's amphiphilic pseudo-amino acid composition and support vector machine for prediction of enzyme subfamily classes
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