Prediction of GABA_ A receptor proteins using the concept of Chou's pseudo-amino acid composition and support vector machine
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Publication:1783532
DOI10.1016/J.JTBI.2011.04.017zbMATH Open1397.92215OpenAlexW2075176419WikidataQ34181833 ScholiaQ34181833MaRDI QIDQ1783532FDOQ1783532
Authors: Hassan Mohabatkar, Abolghasem Esmaeili, Majid Mohammad-Beigi 
Publication date: 21 September 2018
Published in: Journal of Theoretical Biology (Search for Journal in Brave)
Full work available at URL: https://doi.org/10.1016/j.jtbi.2011.04.017
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Cites Work
- Title not available (Why is that?)
- A novel feature representation method based on Chou's pseudo amino acid composition for protein structural class prediction
- Using the concept of Chou's pseudo amino acid composition for risk type prediction of human papillomaviruses
- The modified Mahalanobis discriminant for predicting outer membrane proteins by using Chou's pseudo amino acid composition
- Using the augmented Chou's pseudo amino acid composition for predicting protein submitochondria locations based on auto covariance approach
- SecretP: identifying bacterial secreted proteins by fusing new features into Chou's pseudo-amino acid composition
- Using Chou's amphiphilic pseudo-amino acid composition and support vector machine for prediction of enzyme subfamily classes
Cited In (33)
- MemHyb: predicting membrane protein types by hybridizing SAAC and PSSM
- Naïve Bayes classifier with feature selection to identify phage virion proteins
- Prediction of protein-protein interaction sites using patch-based residue characterization
- iCDI-PseFpt: identify the channel-drug interaction in cellular networking with PseAAC and molecular fingerprints
- Predicting protein subchloroplast locations with both single and multiple sites via three different modes of Chou's pseudo amino acid compositions
- A combined approach for the classification of G protein-coupled receptors and its application to detect GPCR splice variants
- Classifying G-protein coupled receptors with bagging classification tree
- Elman RNN based classification of proteins sequences on account of their mutual information
- Annotating the protein-RNA interaction sites in proteins using evolutionary information and protein backbone structure
- Comprehensive comparative analysis and identification of RNA-binding protein domains: multi-class classification and feature selection
- Linear regression model of short \(k\)-word: a similarity distance suitable for biological sequences with various lengths
- Machine learning approaches for discrimination of extracellular matrix proteins using hybrid feature space
- Classification of membrane protein types using voting feature interval in combination with Chou's pseudo amino acid composition
- A new hybrid fractal algorithm for predicting thermophilic nucleotide sequences
- A segmented principal component analysis -- regression approach to QSAR study of peptides
- RFCRYS: sequence-based protein crystallization propensity prediction by means of random forest
- Discriminating bioluminescent proteins by incorporating average chemical shift and evolutionary information into the general form of Chou's pseudo amino acid composition
- Interrogating noise in protein sequences from the perspective of protein-protein interactions prediction
- Multi-kernel transfer learning based on Chou's PseAAC formulation for protein submitochondria localization
- Neural network and SVM classifiers accurately predict lipid binding proteins, irrespective of sequence homology
- Protein fold recognition by alignment of amino acid residues using kernelized dynamic time warping
- Predicting anticancer peptides with Chou's pseudo amino acid composition and investigating their mutagenicity via ames test
- Gram-positive and Gram-negative protein subcellular localization by incorporating evolutionary-based descriptors into Chou's general PseAAC
- A set of descriptors for identifying the protein-drug interaction in cellular networking
- Protein subcellular localization in human and hamster cell lines: employing local ternary patterns of fluorescence microscopy images
- pLoc\_bal-mGneg: predict subcellular localization of Gram-negative bacterial proteins by quasi-balancing training dataset and general PseAAC
- Predicting mycobacterial proteins subcellular locations by incorporating pseudo-average chemical shift into the general form of Chou's pseudo amino acid composition
- Prediction of presynaptic and postsynaptic neurotoxins based on feature extraction
- Analysis and prediction of ion channel inhibitors by using feature selection and Chou's general pseudo amino acid composition
- A novel statistical measure for sequence comparison on the basis of \(k\)-word counts
- Characterization of structure-antioxidant activity relationship of peptides in free radical systems using QSAR models: key sequence positions and their amino acid properties
- Protein space: a natural method for realizing the nature of protein universe
- iPPI-PseAAC(CGR): identify protein-protein interactions by incorporating chaos game representation into PseAAC
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