Prediction of protein-protein interaction sites using patch-based residue characterization

DOI10.1016/j.jtbi.2011.10.021zbMath1307.92088OpenAlexW1973964562WikidataQ51508591 ScholiaQ51508591MaRDI QIDQ2263508

Zhijun Qiu, Xicheng Wang

Publication date: 18 March 2015

Published in: Journal of Theoretical Biology (Search for Journal in Brave)

Full work available at URL: https://doi.org/10.1016/j.jtbi.2011.10.021

zbMATH Keywords

random forestsmultiple-patch modelresidue clustering

Mathematics Subject Classification ID

Biochemistry, molecular biology (92C40)

Related Items

Efficacy of function specific 3D-motifs in enzyme classification according to their EC-numbers, A feature extraction technique using bi-gram probabilities of position specific scoring matrix for protein fold recognition, Prediction of interface residue based on the features of residue interaction network, Interrogating noise in protein sequences from the perspective of protein-protein interactions prediction

Uses Software

• Cell-PLoc
• GPCR-2L
• iLoc-Virus
• iLoc-Euk
• Plant-mPLoc
• AFP-Pred
• GPCR-GIA
• Quat-2L
• SecretP
• GPCR-CA
• Euk-mPLoc
• NR-2L
• PSAIA

Cites Work

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• Using the augmented Chou's pseudo amino acid composition for predicting protein submitochondria locations based on auto covariance approach
• Some remarks on protein attribute prediction and pseudo amino acid composition
• Using the concept of Chou's pseudo amino acid composition for risk type prediction of human papillomaviruses
• SecretP: identifying bacterial secreted proteins by fusing new features into Chou's pseudo-amino acid composition
• Prediction of GABA\(_{\mathrm A}\) receptor proteins using the concept of Chou's pseudo-amino acid composition and support vector machine
• \textbf{iLoc-Virus}: a multi-label learning classifier for identifying the subcellular localization of virus proteins with both single and multiple sites
• The disposition of the LZCC protein residues in wenxiang diagram provides new insights into the protein-protein interaction mechanism
• The modified Mahalanobis discriminant for predicting outer membrane proteins by using Chou's pseudo amino acid composition
• Predicting protein structural classes with pseudo amino acid composition: an approach using geometric moments of cellular automaton image
• Using Chou's amphiphilic pseudo-amino acid composition and support vector machine for prediction of enzyme subfamily classes
• Bio-entity network for analysis of protein-protein interaction networks
• Random forests