Prediction of protein-protein interaction sites using patch-based residue characterization
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Publication:2263508
DOI10.1016/J.JTBI.2011.10.021zbMATH Open1307.92088OpenAlexW1973964562WikidataQ51508591 ScholiaQ51508591MaRDI QIDQ2263508FDOQ2263508
Authors: Zhijun Qiu, Xicheng Wang 
Publication date: 18 March 2015
Published in: Journal of Theoretical Biology (Search for Journal in Brave)
Full work available at URL: https://doi.org/10.1016/j.jtbi.2011.10.021
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Cites Work
- \textbf{iLoc-Virus}: a multi-label learning classifier for identifying the subcellular localization of virus proteins with both single and multiple sites
- Random forests
- Some remarks on protein attribute prediction and pseudo amino acid composition
- Use of fuzzy clustering technique and matrices to classify amino acids and its impact to Chou's pseudo amino acid composition
- Using the concept of Chou's pseudo amino acid composition for risk type prediction of human papillomaviruses
- The modified Mahalanobis discriminant for predicting outer membrane proteins by using Chou's pseudo amino acid composition
- Using the augmented Chou's pseudo amino acid composition for predicting protein submitochondria locations based on auto covariance approach
- SecretP: identifying bacterial secreted proteins by fusing new features into Chou's pseudo-amino acid composition
- Prediction of GABA\(_{\mathrm A}\) receptor proteins using the concept of Chou's pseudo-amino acid composition and support vector machine
- Using Chou's amphiphilic pseudo-amino acid composition and support vector machine for prediction of enzyme subfamily classes
- The disposition of the LZCC protein residues in wenxiang diagram provides new insights into the protein-protein interaction mechanism
- Predicting protein structural classes with pseudo amino acid composition: an approach using geometric moments of cellular automaton image
- Bio-entity network for analysis of protein-protein interaction networks
Cited In (10)
- Prediction of protein-protein interaction sites with conditional random fields
- Sequence-based prediction of protein-protein interaction sites with L1-logreg classifier
- Prediction of interface residue based on the features of residue interaction network
- Efficacy of function specific 3D-motifs in enzyme classification according to their EC-numbers
- Unbiased protein interface prediction based on ligand diversity quantification
- Interrogating noise in protein sequences from the perspective of protein-protein interactions prediction
- A feature extraction technique using bi-gram probabilities of position specific scoring matrix for protein fold recognition
- Classifiers for discrimination of significant protein residues and protein-protein interaction using concepts of information theory and machine learning.
- A method for protein accessibility prediction based on residue types and conformational states
- Prediction of posttranslational modification sites from amino acid sequences with kernel methods
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