SecretP: identifying bacterial secreted proteins by fusing new features into Chou's pseudo-amino acid composition

DOI10.1016/j.jtbi.2010.08.001zbMath1410.92040OpenAlexW1992965194WikidataQ44759878 ScholiaQ44759878MaRDI QIDQ1732912

Jiesi Luo, Wenjia Xiong, Gongbing Li, Wenli Qin, Yizhou Li, Meng-long Li, Yan-zhi Guo, Le-zheng Yu

Publication date: 26 March 2019

Published in: Journal of Theoretical Biology (Search for Journal in Brave)

Full work available at URL: https://doi.org/10.1016/j.jtbi.2010.08.001

zbMATH Keywords

support vector machinepseudo-amino acid compositionGram-negative bacteriaGram-positive bacteria

Mathematics Subject Classification ID

Applications of statistics to biology and medical sciences; meta analysis (62P10) Learning and adaptive systems in artificial intelligence (68T05) Biochemistry, molecular biology (92C40) Cell biology (92C37)

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Uses Software

• Psortb
• PSI-BLAST
• BLAST
• GPCR-GIA
• SecretP
• GPCR-CA
• Signal-CF
• Signal-3L
• Euk-mPLoc
• Phobius
• ExPASy
• FoldIndex

Cites Work

• Unnamed Item
• Using the augmented Chou's pseudo amino acid composition for predicting protein submitochondria locations based on auto covariance approach
• Using the concept of Chou's pseudo amino acid composition for risk type prediction of human papillomaviruses
• The modified Mahalanobis discriminant for predicting outer membrane proteins by using Chou's pseudo amino acid composition
• Predicting protein structural classes with pseudo amino acid composition: an approach using geometric moments of cellular automaton image
• Identify catalytic triads of serine hydrolases by support vector machines
• Using Chou's amphiphilic pseudo-amino acid composition and support vector machine for prediction of enzyme subfamily classes