Using Chou's amphiphilic pseudo-amino acid composition and support vector machine for prediction of enzyme subfamily classes
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Publication:2211634
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Cites work
- Fuzzy KNN for predicting membrane protein types from pseudo-amino acid composition
- Predicting enzyme family classes by hybridizing gene product composition and pseudo-amino acid composition
- Predicting membrane protein type by functional domain composition and pseudo-amino acid composition
- Prediction of protein subcellular location using hydrophobic patterns of amino acid sequence
- Pseudo amino acid composition and multi-class support vector machines approach for conotoxin superfamily classification
- Support-vector networks
- Using pseudo-amino acid composition and support vector machine to predict protein structural class
- Using stacked generalization to predict membrane protein types based on pseudo-amino acid composition
Cited in
(62)- Physics and chemistry-driven artificial neural network for predicting bioactivity of peptides and proteins and their design
- Predicting protein fold pattern with functional domain and sequential evolution information
- Using support vector machines to distinguish enzymes: approached by incorporating wavelet transform
- Use of fuzzy clustering technique and matrices to classify amino acids and its impact to Chou's pseudo amino acid composition
- Multi-target QPDR classification model for human breast and colon cancer-related proteins using star graph topological indices
- Prediction of protein structural classes by recurrence quantification analysis based on chaos game representation
- Predicting DNA- and RNA-binding proteins from sequences with kernel methods
- A novel representation for apoptosis protein subcellular localization prediction using support vector machine
- Using the augmented Chou's pseudo amino acid composition for predicting protein submitochondria locations based on auto covariance approach
- \(\gamma\)-turn types prediction in proteins using the two-stage hybrid neural discriminant model
- Multiclass cancer classification by support vector machines with class-wise optimized genes and probability estimates
- Protein functional class prediction using global encoding of amino acid sequence
- SubChlo: predicting protein subchloroplast locations with pseudo-amino acid composition and the evidence-theoretic \(K\)-nearest neighbor (ET-KNN) algorithm
- Efficiency analysis of KNN and minimum distance-based classifiers in enzyme family prediction
- A novel feature representation method based on Chou's pseudo amino acid composition for protein structural class prediction
- A protein fold classifier formed by fusing different modes of pseudo amino acid composition via PSSM
- Predicting membrane protein types by fusing composite protein sequence features into pseudo amino acid composition
- Some remarks on protein attribute prediction and pseudo amino acid composition
- BlaPred: predicting and classifying -lactamase using a 3-tier prediction system via Chou's general PseAAC
- pLoc\_bal-mGneg: predict subcellular localization of Gram-negative bacterial proteins by quasi-balancing training dataset and general PseAAC
- Analysis and prediction of ion channel inhibitors by using feature selection and Chou's general pseudo amino acid composition
- Predicting membrane protein types by incorporating protein topology, domains, signal peptides, and physicochemical properties into the general form of Chou's pseudo amino acid composition
- Characterization of structure-antioxidant activity relationship of peptides in free radical systems using QSAR models: key sequence positions and their amino acid properties
- A novel statistical measure for sequence comparison on the basis of \(k\)-word counts
- Protein space: a natural method for realizing the nature of protein universe
- Prediction of the parallel/antiparallel orientation of beta-strands using amino acid pairing preferences and support vector machines
- iPPI-PseAAC(CGR): identify protein-protein interactions by incorporating chaos game representation into PseAAC
- Protein classification using texture descriptors extracted from the protein backbone image
- High performance set of PseAAC and sequence based descriptors for protein classification
- SecretP: identifying bacterial secreted proteins by fusing new features into Chou's pseudo-amino acid composition
- 2D-MH: a web-server for generating graphic representation of protein sequences based on the physicochemical properties of their constituent amino acids
- A study of entropy/clarity of genetic sequences using metric spaces and fuzzy sets
- Prediction of GABA\(_{\mathrm A}\) receptor proteins using the concept of Chou's pseudo-amino acid composition and support vector machine
- Predicting mycobacterial proteins subcellular locations by incorporating pseudo-average chemical shift into the general form of Chou's pseudo amino acid composition
- RFCRYS: sequence-based protein crystallization propensity prediction by means of random forest
- \textbf{iLoc-Virus}: a multi-label learning classifier for identifying the subcellular localization of virus proteins with both single and multiple sites
- A novel canonical dual computational approach for prion AGAAAAGA amyloid fibril molecular modeling
- \textit{In vitro} transcriptomic prediction of hepatotoxicity for early drug discovery
- Prediction protein structural classes with pseudo-amino acid composition: approximate entropy and hydrophobicity pattern
- Predicting protein subchloroplast locations with both single and multiple sites via three different modes of Chou's pseudo amino acid compositions
- The modified Mahalanobis discriminant for predicting outer membrane proteins by using Chou's pseudo amino acid composition
- Predicting protein structural class based on multi-features fusion
- Predicting protein structural classes with pseudo amino acid composition: an approach using geometric moments of cellular automaton image
- Natural/random protein classification models based on star network topological indices
- Identify catalytic triads of serine hydrolases by support vector machines
- Predicting enzyme family classes by hybridizing gene product composition and pseudo-amino acid composition
- Pseudo amino acid composition and multi-class support vector machines approach for conotoxin superfamily classification
- Predicting ion channels and their types by the dipeptide mode of pseudo amino acid composition
- MemHyb: predicting membrane protein types by hybridizing SAAC and PSSM
- Multi-kernel transfer learning based on Chou's PseAAC formulation for protein submitochondria localization
- Prediction of protein-protein interaction sites using patch-based residue characterization
- LEGO-based generalized set of two linear algebraic 3D bio-macro-molecular descriptors: theory and validation by QSARs
- Prediction of \(\beta\)-lactamase and its class by Chou's pseudo-amino acid composition and support vector machine
- Discrimination of acidic and alkaline enzyme using Chou's pseudo amino acid composition in conjunction with probabilistic neural network model
- A set of descriptors for identifying the protein-drug interaction in cellular networking
- ECS: an automatic enzyme classifier based on functional domain composition
- Efficacy of function specific 3D-motifs in enzyme classification according to their EC-numbers
- Linear regression model of short k-word: a similarity distance suitable for biological sequences with various lengths
- Predicting anticancer peptides with Chou's pseudo amino acid composition and investigating their mutagenicity via ames test
- Kernel methods for phenotyping complex plant architecture
- Annotating the protein-RNA interaction sites in proteins using evolutionary information and protein backbone structure
- Comprehensive comparative analysis and identification of RNA-binding protein domains: multi-class classification and feature selection
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