A novel representation for apoptosis protein subcellular localization prediction using support vector machine

DOI10.1016/j.jtbi.2009.03.025zbMath1402.92163OpenAlexW2030242529WikidataQ47190197 ScholiaQ47190197MaRDI QIDQ1624357

Wen Zhu, Bo Liao, Dachao Li, Li Zhang

Publication date: 16 November 2018

Published in: Journal of Theoretical Biology (Search for Journal in Brave)

Full work available at URL: https://doi.org/10.1016/j.jtbi.2009.03.025

zbMATH Keywords

support vector machinelocal featuressubcellular locationapoptosis proteindistance frequency

Mathematics Subject Classification ID

Learning and adaptive systems in artificial intelligence (68T05) Biochemistry, molecular biology (92C40) Cell biology (92C37)

Related Items (14)

Generalized lattice graphs for 2D-visualization of biological information ⋮ A new 2D graphical representation of protein sequence and its application ⋮ Predicting Gram-positive bacterial protein subcellular localization based on localization motifs ⋮ Protein subcellular localization in human and hamster cell lines: employing local ternary patterns of fluorescence microscopy images ⋮ Detrended cross-correlation coefficient: application to predict apoptosis protein subcellular localization ⋮ A new ensemble method with feature space partitioning for high-dimensional data classification ⋮ Predicting membrane protein types by fusing composite protein sequence features into pseudo amino acid composition ⋮ Prediction of subcellular location of apoptosis proteins combining tri-Gram encoding based on PSSM and recursive feature elimination ⋮ The preliminary efficacy evaluation of the CTLA-4-ig treatment against lupus nephritis through \textit{in-silico} analyses ⋮ Predicting apoptosis protein subcellular localization by integrating auto-cross correlation and PSSM into Chou's PseAAC ⋮ CE-PLoc: An ensemble classifier for predicting protein subcellular locations by fusing different modes of pseudo amino acid composition ⋮ Identifying anticancer peptides by using a generalized chaos game representation ⋮ Prediction of protein subcellular localization with oversampling approach and Chou's general PseAAC ⋮ A 3D graphical representation of protein sequences based on the Gray code

Uses Software

• LIBSVM
• ESLpred
• Hum-PLoc
• Gpos-PLoc

Cites Work

• Prediction of the subcellular location of apoptosis proteins
• Prediction of apoptosis protein subcellular location using improved hybrid approach and pseudo-amino acid composition
• Using Chou's amphiphilic pseudo-amino acid composition and support vector machine for prediction of enzyme subfamily classes
• Unnamed Item

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