Protein subcellular localization in human and hamster cell lines: employing local ternary patterns of fluorescence microscopy images

DOI10.1016/J.JTBI.2013.08.017zbMath1411.92113OpenAlexW2009019259WikidataQ47673486 ScholiaQ47673486MaRDI QIDQ2632347

Yanyan Li

Publication date: 14 May 2019

Published in: Journal of Theoretical Biology (Search for Journal in Brave)

Full work available at URL: https://doi.org/10.1016/j.jtbi.2013.08.017

zbMATH Keywords

support vector machineSMOTEMRMR

Mathematics Subject Classification ID

Biochemistry, molecular biology (92C40) Computational methods for problems pertaining to biology (92-08)

Related Items (1)

Gram-positive and Gram-negative protein subcellular localization by incorporating evolutionary-based descriptors into Chou's general PseAAC

Uses Software

• HandTill2001
• iLoc-Virus
• iLoc-Gpos
• iLoc-Plant
• iLoc-Animal
• iLoc-Hum
• iLoc-Euk
• iRSpot-PseDNC
• iSNO-PseAAC
• MemHyb
• SMOTE

Cites Work

• Unnamed Item
• CE-PLoc: An ensemble classifier for predicting protein subcellular locations by fusing different modes of pseudo amino acid composition
• Information theoretic combination of pattern classifiers
• Texture classification using the support vector machines.
• Robust numerical features for description and classification of subcellular location patterns in fluorescence microscope images
• Use of fuzzy clustering technique and matrices to classify amino acids and its impact to Chou's pseudo amino acid composition
• A novel representation for apoptosis protein subcellular localization prediction using support vector machine
• A novel feature representation method based on Chou's pseudo amino acid composition for protein structural class prediction
• Predicting membrane protein types by fusing composite protein sequence features into pseudo amino acid composition
• Some remarks on protein attribute prediction and pseudo amino acid composition
• Predicting membrane protein types by incorporating protein topology, domains, signal peptides, and physicochemical properties into the general form of Chou's pseudo amino acid composition
• Using the concept of Chou's pseudo amino acid composition for risk type prediction of human papillomaviruses
• Prediction of GABA\(_{\mathrm A}\) receptor proteins using the concept of Chou's pseudo-amino acid composition and support vector machine
• \textbf{iLoc-Virus}: a multi-label learning classifier for identifying the subcellular localization of virus proteins with both single and multiple sites
• MemHyb: predicting membrane protein types by hybridizing SAAC and PSSM
• Multi-kernel transfer learning based on Chou's PseAAC formulation for protein submitochondria localization
• A simple generalisation of the area under the ROC curve for multiple class classification problems

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