MemHyb: predicting membrane protein types by hybridizing SAAC and PSSM
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Publication:2263483
DOI10.1016/j.jtbi.2011.09.026zbMath1307.92308OpenAlexW2032188627WikidataQ51518271 ScholiaQ51518271MaRDI QIDQ2263483
Publication date: 18 March 2015
Published in: Journal of Theoretical Biology (Search for Journal in Brave)
Full work available at URL: https://doi.org/10.1016/j.jtbi.2011.09.026
Learning and adaptive systems in artificial intelligence (68T05) Biochemistry, molecular biology (92C40) Protein sequences, DNA sequences (92D20)
Related Items (15)
Annotating the protein-RNA interaction sites in proteins using evolutionary information and protein backbone structure ⋮ Protein subcellular localization in human and hamster cell lines: employing local ternary patterns of fluorescence microscopy images ⋮ A two-stage SVM method to predict membrane protein types by incorporating amino acid classifications and physicochemical properties into a general form of Chou's PseAAC ⋮ Prediction of protein structure classes using hybrid space of multi-profile Bayes and bi-gram probability feature spaces ⋮ NucPosPred: predicting species-specific genomic nucleosome positioning via four different modes of general PseKNC ⋮ IMem-2LSAAC: a two-level model for discrimination of membrane proteins and their types by extending the notion of SAAC into Chou's pseudo amino acid composition ⋮ Naïve Bayes classifier with feature selection to identify phage virion proteins ⋮ iMethyl-STTNC: identification of N\(^6\)-methyladenosine sites by extending the idea of SAAC into Chou's PseAAC to formulate RNA sequences ⋮ Predicting membrane protein types by incorporating a novel feature set into Chou's general PseAAC ⋮ A feature extraction technique using bi-gram probabilities of position specific scoring matrix for protein fold recognition ⋮ MFSC: multi-voting based feature selection for classification of Golgi proteins by adopting the general form of Chou's PseAAC components ⋮ Bi-PSSM: position specific scoring matrix based intelligent computational model for identification of mycobacterial membrane proteins ⋮ Predicting protein subchloroplast locations with both single and multiple sites via three different modes of Chou's pseudo amino acid compositions ⋮ Classification of membrane protein types using voting feature interval in combination with Chou's pseudo amino acid composition ⋮ MemHyb
Uses Software
Cites Work
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- Some remarks on protein attribute prediction and pseudo amino acid composition
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- Prediction of GABA\(_{\mathrm A}\) receptor proteins using the concept of Chou's pseudo-amino acid composition and support vector machine
- The modified Mahalanobis discriminant for predicting outer membrane proteins by using Chou's pseudo amino acid composition
- Using stacked generalization to predict membrane protein types based on pseudo-amino acid composition
- Using Chou's amphiphilic pseudo-amino acid composition and support vector machine for prediction of enzyme subfamily classes
- A Class of Error-Correcting Codes in $p^m $ Symbols
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