Using stacked generalization to predict membrane protein types based on pseudo-amino acid composition
DOI10.1016/J.JTBI.2006.05.006zbMATH Open1447.92315OpenAlexW2040033996WikidataQ38405811 ScholiaQ38405811MaRDI QIDQ2201981FDOQ2201981
Shuang-Quan Wang, Jie Yang, Kuo-Chen Chou
Publication date: 17 September 2020
Published in: Journal of Theoretical Biology (Search for Journal in Brave)
Full work available at URL: https://doi.org/10.1016/j.jtbi.2006.05.006
support vector machinestackinginstance-based learningmembrane protein typespseudo-amino acid compositionnonlinear combination
Cites Work
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- Improvements to Platt's SMO Algorithm for SVM Classifier Design
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- SLLE for predicting membrane protein types
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Cited In (17)
- MemHyb: predicting membrane protein types by hybridizing SAAC and PSSM
- A study of entropy/clarity of genetic sequences using metric spaces and fuzzy sets
- Physics and chemistry-driven artificial neural network for predicting bioactivity of peptides and proteins and their design
- Predicting protein structural class based on multi-features fusion
- Predicting membrane protein types by incorporating a novel feature set into Chou's general PseAAC
- Classification of membrane protein types using voting feature interval in combination with Chou's pseudo amino acid composition
- Some remarks on protein attribute prediction and pseudo amino acid composition
- Use of fuzzy clustering technique and matrices to classify amino acids and its impact to Chou's pseudo amino acid composition
- Using the concept of Chou's pseudo amino acid composition for risk type prediction of human papillomaviruses
- The modified Mahalanobis discriminant for predicting outer membrane proteins by using Chou's pseudo amino acid composition
- Predicting membrane protein types by incorporating protein topology, domains, signal peptides, and physicochemical properties into the general form of Chou's pseudo amino acid composition
- Using Chou's amphiphilic pseudo-amino acid composition and support vector machine for prediction of enzyme subfamily classes
- Novel scales based on hydrophobicity indices for secondary protein structure
- Constructing a linear QSAR for some metabolizable drugs by human or pig flavin-containing monooxygenases using some molecular features selected by a genetic algorithm trained SVM
- A two-stage SVM method to predict membrane protein types by incorporating amino acid classifications and physicochemical properties into a general form of Chou's PseAAC
- Predicting membrane protein types by fusing composite protein sequence features into pseudo amino acid composition
- Prediction protein structural classes with pseudo-amino acid composition: approximate entropy and hydrophobicity pattern
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