A two-stage SVM method to predict membrane protein types by incorporating amino acid classifications and physicochemical properties into a general form of Chou's PseAAC
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Publication:2632571
DOI10.1016/j.jtbi.2013.11.017zbMath1412.92242OpenAlexW2006346802WikidataQ51135345 ScholiaQ51135345MaRDI QIDQ2632571
Zu-Guo Yu, Guo-Sheng Han, V. V. Anh
Publication date: 15 May 2019
Published in: Journal of Theoretical Biology (Search for Journal in Brave)
Full work available at URL: https://doi.org/10.1016/j.jtbi.2013.11.017
feature extractionsupport vector machineHilbert-Huang transformmembrane protein typeamino acid classification
Learning and adaptive systems in artificial intelligence (68T05) Protein sequences, DNA sequences (92D20) Computational methods for problems pertaining to biology (92-08)
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Uses Software
Cites Work
- Unnamed Item
- SLLE for predicting membrane protein types
- Predicting membrane protein types by fusing composite protein sequence features into pseudo amino acid composition
- Some remarks on protein attribute prediction and pseudo amino acid composition
- Predicting membrane protein types by incorporating protein topology, domains, signal peptides, and physicochemical properties into the general form of Chou's pseudo amino acid composition
- The modified Mahalanobis discriminant for predicting outer membrane proteins by using Chou's pseudo amino acid composition
- Chaos game representation of protein sequences based on the detailed HP model and their multifractal and correlation analyses
- Using stacked generalization to predict membrane protein types based on pseudo-amino acid composition
- Fuzzy KNN for predicting membrane protein types from pseudo-amino acid composition
- Prediction of membrane protein types from sequences and position-specific scoring matrices
- MemHyb: predicting membrane protein types by hybridizing SAAC and PSSM
- Application of density similarities to predict membrane protein types based on pseudo-amino acid composition
- On the Complexity of Finite Sequences
- The empirical mode decomposition and the Hilbert spectrum for nonlinear and non-stationary time series analysis
