SLLE for predicting membrane protein types

DOI10.1016/J.JTBI.2004.07.023MaRDI QIDQ776432zbMATH OpenOpenAlexWikidataFDO

Authors Meng Wang, Jie Yang, Zhi-Jie Xu, Kuo-Chen Chou

Publication date 9 July 2020

Published in Journal of Theoretical Biology (Search for Journal in Brave)

Full work available at URL https://doi.org/10.1016/j.jtbi.2004.07.023

zbMATH Keywords

nonlinear dimensionality reductionbioinformaticsChou's invariance theoremcovariant discriminant algorithmmembrane protein typespseudo amino acid compositionSLLE

Mathematics Subject Classification ID

Protein sequences, DNA sequences (92D20)

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Cited in

(14)

• Prediction of the subcellular location of apoptosis proteins
• Prediction of apoptosis protein subcellular location using improved hybrid approach and pseudo-amino acid composition
• Fuzzy KNN for predicting membrane protein types from pseudo-amino acid composition
• Predicting membrane protein type by functional domain composition and pseudo-amino acid composition
• The modified Mahalanobis discriminant for predicting outer membrane proteins by using Chou's pseudo amino acid composition
• Prediction of membrane protein types from sequences and position-specific scoring matrices
• Predicting membrane protein types by incorporating a novel feature set into Chou's general PseAAC
• Using stacked generalization to predict membrane protein types based on pseudo-amino acid composition
• Novel scales based on hydrophobicity indices for secondary protein structure
• Predicting membrane protein types by incorporating protein topology, domains, signal peptides, and physicochemical properties into the general form of Chou's pseudo amino acid composition
• Using LogitBoost classifier to predict protein structural classes
• A two-stage SVM method to predict membrane protein types by incorporating amino acid classifications and physicochemical properties into a general form of Chou's PseAAC
• Identifying 5-methylcytosine sites in RNA sequence using composite encoding feature into Chou's PseKNC
• IMem-2LSAAC: a two-level model for discrimination of membrane proteins and their types by extending the notion of SAAC into Chou's pseudo amino acid composition

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