Prediction of membrane protein types from sequences and position-specific scoring matrices

DOI10.1016/j.jtbi.2007.01.016zbMath1455.92115OpenAlexW2028332059WikidataQ80156521 ScholiaQ80156521MaRDI QIDQ2219704

Jian Guo, Xian Pu, Howard Leung, Yuanlie Lin

Publication date: 21 January 2021

Published in: Journal of Theoretical Biology (Search for Journal in Brave)

Full work available at URL: https://doi.org/10.1016/j.jtbi.2007.01.016

zbMATH Keywords

support vector machineposition-specific scoring matrixmembrane proteins type

Mathematics Subject Classification ID

Protein sequences, DNA sequences (92D20) Cell biology (92C37)

Related Items

Annotating the protein-RNA interaction sites in proteins using evolutionary information and protein backbone structure ⋮ A two-stage SVM method to predict membrane protein types by incorporating amino acid classifications and physicochemical properties into a general form of Chou's PseAAC ⋮ Predicting membrane protein types by incorporating a novel feature set into Chou's general PseAAC ⋮ Prediction protein structural classes with pseudo-amino acid composition: approximate entropy and hydrophobicity pattern ⋮ Predicting protein structural classes with pseudo amino acid composition: an approach using geometric moments of cellular automaton image

Uses Software

• PSI-BLAST
• BLAST

Cites Work

• SLLE for predicting membrane protein types
• Predicting membrane protein type by functional domain composition and pseudo-amino acid composition
• Fuzzy KNN for predicting membrane protein types from pseudo-amino acid composition
• Unnamed Item