IMem-2LSAAC: a two-level model for discrimination of membrane proteins and their types by extending the notion of SAAC into Chou's pseudo amino acid composition
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Publication:1649407
DOI10.1016/J.JTBI.2018.01.008zbMath1397.92180OpenAlexW2784083480WikidataQ47562851 ScholiaQ47562851MaRDI QIDQ1649407
Muhammad Arif, Maqsood Hayat, Zahoor Jan
Publication date: 6 July 2018
Published in: Journal of Theoretical Biology (Search for Journal in Brave)
Full work available at URL: https://doi.org/10.1016/j.jtbi.2018.01.008
Biochemistry, molecular biology (92C40) Protein sequences, DNA sequences (92D20) Computational methods for problems pertaining to biology (92-08)
Related Items (13)
NucPosPred: predicting species-specific genomic nucleosome positioning via four different modes of general PseKNC ⋮ BlaPred: predicting and classifying \(\beta\)-lactamase using a 3-tier prediction system via Chou's general PseAAC ⋮ pLoc\_bal-mGneg: predict subcellular localization of Gram-negative bacterial proteins by quasi-balancing training dataset and general PseAAC ⋮ Predicting structural classes of proteins by incorporating their global and local physicochemical and conformational properties into general Chou's PseAAC ⋮ iMethyl-STTNC: identification of N\(^6\)-methyladenosine sites by extending the idea of SAAC into Chou's PseAAC to formulate RNA sequences ⋮ Analysis and prediction of ion channel inhibitors by using feature selection and Chou's general pseudo amino acid composition ⋮ iPPI-PseAAC(CGR): identify protein-protein interactions by incorporating chaos game representation into PseAAC ⋮ Fu-SulfPred: identification of protein S-sulfenylation sites by fusing forests via Chou's general PseAAC ⋮ Prediction and functional analysis of prokaryote lysine acetylation site by incorporating six types of features into Chou's general PseAAC ⋮ pSSbond-PseAAC: prediction of disulfide bonding sites by integration of PseAAC and statistical moments ⋮ MFSC: multi-voting based feature selection for classification of Golgi proteins by adopting the general form of Chou's PseAAC components ⋮ Analysis and prediction of animal toxins by various Chou's pseudo components and reduced amino acid compositions ⋮ SPrenylC-PseAAC: a sequence-based model developed via Chou's 5-steps rule and general PseAAC for identifying S-prenylation sites in proteins
Uses Software
- Memtype-2L
- iNuc-PseKNC
- pSuc-Lys
- Acalpred
- propy
- PseAAC-Builder
- Pse-in-One
- iPro54-PseKNC
- iRSpot-TNCPseAAC
- iPPI-Esml
- iDrug-Target
- iDNA-Methyl
- iPPBS-Opt
- iSuc-PseOpt
- AFP-Pred
- iMethyl-PseAAC
- iSNO-PseAAC
- Pse-analysis
- iPTM-mLys
- iACP
- iCar-PseCp
- iHyd-PseCp
- iPhos-PseEn
- iOri-Human
- iRNA-AI
- pLoc-mAnimal
- pLoc-mVirus
- pLoc-mEuk
- iATC-mHyb
- iPreny-PseAAC
- iRSpot-EL
- iPromoter-2L
- pLoc-mGneg
- pLoc-mPlant
- DSPMP
- iHSP-PseRAAAC
- MemHyb
- TargetFreeze
- iTIS-PseKNC
- iRSpot-GAEnsC
- MitProt-Pred
- iKcr-PseEns
- iROS-gPseKNC
- iNuc-STNC
- NRPSpredictor2
Cites Work
- Unnamed Item
- pSuc-Lys: predict lysine succinylation sites in proteins with PseAAC and ensemble random forest approach
- Classification of membrane protein types using voting feature interval in combination with Chou's pseudo amino acid composition
- SLLE for predicting membrane protein types
- Predicting membrane protein types by fusing composite protein sequence features into pseudo amino acid composition
- Some remarks on protein attribute prediction and pseudo amino acid composition
- The modified Mahalanobis discriminant for predicting outer membrane proteins by using Chou's pseudo amino acid composition
- Fuzzy KNN for predicting membrane protein types from pseudo-amino acid composition
- MemHyb: predicting membrane protein types by hybridizing SAAC and PSSM
- Discrimination of acidic and alkaline enzyme using Chou's pseudo amino acid composition in conjunction with probabilistic neural network model
- Application of density similarities to predict membrane protein types based on pseudo-amino acid composition
- A two-stage SVM method to predict membrane protein types by incorporating amino acid classifications and physicochemical properties into a general form of Chou's PseAAC
- On Estimation of a Probability Density Function and Mode
- Random forests
- Gene selection for cancer classification using support vector machines
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