pSuc-Lys: predict lysine succinylation sites in proteins with PseAAC and ensemble random forest approach
From MaRDI portal
(Redirected from Publication:305612)
PSuc-Lys: predict lysine succinylation sites in proteins with PseAAC and ensemble random forest approach
PSuc-Lys: predict lysine succinylation sites in proteins with PseAAC and ensemble random forest approach
Recommendations
- PSSM-Suc: accurately predicting succinylation using position specific scoring matrix into bigram for feature extraction
- Accurate in silico identification of protein succinylation sites using an iterative semi-supervised learning technique
- Lysine acetylation sites prediction using an ensemble of support vector machine classifiers
- Prediction and functional analysis of prokaryote lysine acetylation site by incorporating six types of features into Chou's general PseAAC
- Dforml(KNN)-PseAAC: detecting formylation sites from protein sequences using K-nearest neighbor algorithm via Chou's 5-step rule and pseudo components
Cites work
- 2D-MH: a web-server for generating graphic representation of protein sequences based on the physicochemical properties of their constituent amino acids
- \textbf{iLoc-Virus}: a multi-label learning classifier for identifying the subcellular localization of virus proteins with both single and multiple sites
- Accurate in silico identification of protein succinylation sites using an iterative semi-supervised learning technique
- Chou's pseudo amino acid composition improves sequence-based antifreeze protein prediction
- Discrimination of acidic and alkaline enzyme using Chou's pseudo amino acid composition in conjunction with probabilistic neural network model
- Gram-positive and Gram-negative protein subcellular localization by incorporating evolutionary-based descriptors into Chou's general PseAAC
- Prediction of \(\beta\)-lactamase and its class by Chou's pseudo-amino acid composition and support vector machine
- Random forests
- Some remarks on protein attribute prediction and pseudo amino acid composition
- The disposition of the LZCC protein residues in wenxiang diagram provides new insights into the protein-protein interaction mechanism
Cited in
(37)- NucPosPred: predicting species-specific genomic nucleosome positioning via four different modes of general PseKNC
- IMem-2LSAAC: a two-level model for discrimination of membrane proteins and their types by extending the notion of SAAC into Chou's pseudo amino acid composition
- Classify vertebrate hemoglobin proteins by incorporating the evolutionary information into the general PseAAC with the hybrid approach
- Characterization of BioPlex network by topological properties
- PSSM-Suc: accurately predicting succinylation using position specific scoring matrix into bigram for feature extraction
- Prediction of metastasis in advanced colorectal carcinomas using CGH data
- Prediction of S-sulfenylation sites using mRMR feature selection and fuzzy support vector machine algorithm
- BlaPred: predicting and classifying -lactamase using a 3-tier prediction system via Chou's general PseAAC
- Predicting apoptosis protein subcellular localization by integrating auto-cross correlation and PSSM into Chou's PseAAC
- pLoc\_bal-mGneg: predict subcellular localization of Gram-negative bacterial proteins by quasi-balancing training dataset and general PseAAC
- Predicting membrane protein types by incorporating a novel feature set into Chou's general PseAAC
- Convex hull analysis of evolutionary and phylogenetic relationships between biological groups
- Analysis and prediction of ion channel inhibitors by using feature selection and Chou's general pseudo amino acid composition
- Lysine acetylation sites prediction using an ensemble of support vector machine classifiers
- Effective DNA binding protein prediction by using key features via Chou's general PseAAC
- iPPI-PseAAC(CGR): identify protein-protein interactions by incorporating chaos game representation into PseAAC
- Fu-SulfPred: identification of protein S-sulfenylation sites by fusing forests via Chou's general PseAAC
- Prediction and functional analysis of prokaryote lysine acetylation site by incorporating six types of features into Chou's general PseAAC
- \textit{In silico} analysis of \textit{plasmodium falciparum} CDPK5 protein through molecular modeling, docking and dynamics
- pSSbond-PseAAC: prediction of disulfide bonding sites by integration of PseAAC and statistical moments
- MFSC: multi-voting based feature selection for classification of Golgi proteins by adopting the general form of Chou's PseAAC components
- Analysis and prediction of animal toxins by various Chou's pseudo components and reduced amino acid compositions
- iRNA-PseKNC(2methyl): identify RNA 2'-O-methylation sites by convolution neural network and Chou's pseudo components
- Identifying N^6-methyladenosine sites using extreme gradient boosting system optimized by particle swarm optimizer
- SPrenylC-PseAAC: a sequence-based model developed via Chou's 5-steps rule and general PseAAC for identifying S-prenylation sites in proteins
- Dforml(KNN)-PseAAC: detecting formylation sites from protein sequences using K-nearest neighbor algorithm via Chou's 5-step rule and pseudo components
- Prediction of interface residue based on the features of residue interaction network
- Bi-PSSM: position specific scoring matrix based intelligent computational model for identification of mycobacterial membrane proteins
- UPFPSR: a ubiquitylation predictor for plant through combining sequence information and random forest
- Prediction of aptamer-protein interacting pairs based on sparse autoencoder feature extraction and an ensemble classifier
- Sequence-based discrimination of protein-RNA interacting residues using a probabilistic approach
- The preliminary efficacy evaluation of the CTLA-4-ig treatment against lupus nephritis through \textit{in-silico} analyses
- Accurate in silico identification of protein succinylation sites using an iterative semi-supervised learning technique
- pSuc-Lys
- Phogly-PseAAC: prediction of lysine phosphoglycerylation in proteins incorporating with position-specific propensity
- Prediction of Golgi-resident protein types using general form of Chou's pseudo-amino acid compositions: approaches with minimal redundancy maximal relevance feature selection
- iLM-2L: a two-level predictor for identifying protein lysine methylation sites and their methylation degrees by incorporating K-gap amino acid pairs into Chou's general PseAAC
Describes a project that uses
Uses Software
- Virus-ploc
- Nuc-ploc
- repDNA
- PredLactamase
- PseKNC-General
- propy
- PseAAC-Builder
- Pse-in-One
- iDNA-Prot
- iLoc-Animal
- PseAAC-General
- iPPBS-Opt
- iLoc-Hum
- iTIS-PseTNC
- iNitro-Tyr
- DSPMP
- iHyd-PseAAC
- Wenxiang
- ProtIdent
- UniProt
- PseKNC
- iRSpot-PseDNC
- iLoc-Virus
- iDNA-Methyl
- Euk-PLoc
- iEnhancer-2L
- MultiP-SChlo
- iPro54-PseKNC
- iRSpot-TNCPseAAC
- iPPI-Esml
- iDrug-Target
- iAMP-2L
- iMiRNA-PseDPC
- iCTX-Type
- iSS-PseDNC
- iRNA-Methyl
- AFP-Pred
- RSARF
- iMethyl-PseAAC
- iSNO-PseAAC
- QuatIdent
- SuccFind
This page was built for publication: pSuc-Lys: predict lysine succinylation sites in proteins with PseAAC and ensemble random forest approach
Report a bug (only for logged in users!)Click here to report a bug for this page (MaRDI item Q305612)
