iRNA-PseKNC(2methyl): identify RNA 2'-O-methylation sites by convolution neural network and Chou's pseudo components
DOI10.1016/J.JTBI.2018.12.034zbMATH Open1406.92217OpenAlexW2906046752WikidataQ90777000 ScholiaQ90777000MaRDI QIDQ1721769FDOQ1721769
Authors: Xianqiang Yang 
Publication date: 13 February 2019
Published in: Journal of Theoretical Biology (Search for Journal in Brave)
Full work available at URL: https://doi.org/10.1016/j.jtbi.2018.12.034
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Learning and adaptive systems in artificial intelligence (68T05) Biochemistry, molecular biology (92C40) Protein sequences, DNA sequences (92D20)
Cites Work
- pSuc-Lys: predict lysine succinylation sites in proteins with PseAAC and ensemble random forest approach
- pLoc\_bal-mGneg: predict subcellular localization of Gram-negative bacterial proteins by quasi-balancing training dataset and general PseAAC
- Some remarks on protein attribute prediction and pseudo amino acid composition
- Predicting membrane protein types by fusing composite protein sequence features into pseudo amino acid composition
- Natural language processing (almost) from scratch
- Using LogitBoost classifier to predict protein structural classes
- iPPI-PseAAC(CGR): identify protein-protein interactions by incorporating chaos game representation into PseAAC
Cited In (6)
- Computational identification of N4-methylcytosine sites in the mouse genome with machine-learning method
- DeepMRMP: a new predictor for multiple types of RNA modification sites using deep learning
- Identifying N\(^6\)-methyladenosine sites using extreme gradient boosting system optimized by particle swarm optimizer
- Identifying 5-methylcytosine sites in RNA sequence using composite encoding feature into Chou's PseKNC
- iRNA-PseKNC
- iMethyl-STTNC: identification of N\(^6\)-methyladenosine sites by extending the idea of SAAC into Chou's PseAAC to formulate RNA sequences
Uses Software
- LogitBoost
- TensorFlow
- Keras
- pSuc-Lys
- propy
- PseAAC-Builder
- Pse-in-One
- Prnam-PC
- iSuc-PseOpt
- PseKNC
- iRSpot-PseDNC
- iRNA-Methyl
- iMethyl-PseAAC
- iSNO-PseAAC
- iSNO-AAPair
- iNitro-Tyr
- iPTM-mLys
- pSumo-CD
- iCar-PseCp
- iHyd-PseCp
- iPhos-PseEvo
- iPhos-PseEn
- pLoc-mAnimal
- pLoc-mEuk
- iRNA-PseColl
- iRNA-2methyl
- iRNAm5C-PseDNC
- iPreny-PseAAC
- iRSpot-EL
- iPromoter-2L
- pLoc-mGneg
- iKcr-PseEns
- iNuc-STNC
- iProt-Sub
- iRNA-PseU
- iRNA-3typeA
- pLoc-mHum
- pLoc_bal-mHum
- iDNA6mA-PseKNC
- PSOFuzzySVM-TMH
- iPPI-PseAAC
- Quokka
- 2L-piRNA
- iEnhancer-EL
- iRO-3wPseKNC
- iUbiq-Lys
- RMBase
- iNuc-ext-PseTNC
- pLoc_bal-mGpos
- iHyd-PseAAC
- BiRen
- iRSpot-Pse6NC
- PSNO
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