Identifying N\(^6\)-methyladenosine sites using extreme gradient boosting system optimized by particle swarm optimizer
From MaRDI portal
Publication:1730106
DOI10.1016/j.jtbi.2019.01.035zbMath1409.92184WikidataQ91316989 ScholiaQ91316989MaRDI QIDQ1730106
Minghao Yin, Jinchao Ji, Ye Zhang, Xiaowei Zhao, Qiao Ning, Hongrui Zhang
Publication date: 11 March 2019
Published in: Journal of Theoretical Biology (Search for Journal in Brave)
Full work available at URL: https://doi.org/10.1016/j.jtbi.2019.01.035
particle swarm optimization; extreme gradient boosting; m\(^6\)A sites; N\(^6\)-methyladenosine; XGboost
90C59: Approximation methods and heuristics in mathematical programming
92D20: Protein sequences, DNA sequences
Uses Software
- Cell-PLoc
- pSuc-Lys
- XGBoost
- Prnam-PC
- iSuc-PseOpt
- iRSpot-PseDNC
- iRNA-Methyl
- iMethyl-PseAAC
- iSNO-AAPair
- iPTM-mLys
- pSumo-CD
- iCar-PseCp
- iHyd-PseCp
- iPhos-PseEvo
- iPhos-PseEn
- iRNA-AI
- pLoc-mAnimal
- pLoc-mVirus
- pLoc-mEuk
- iRNA-PseColl
- iRNA-2methyl
- iRNAm5C-PseDNC
- iRSpot-EL
- iPromoter-2L
- pLoc-mGneg
- pLoc-mPlant
- iKcr-PseEns
- iRNA-PseU
- iRNA-3typeA
- pLoc-mHum
- iDNA6mA-PseKNC
- iPPI-PseAAC
- 2L-piRNA
- iRO-3wPseKNC
- iHyd-PseAAC
- iRSpot-Pse6NC
- PSNO
- iLoc-lncRNA
- Fu-SulfPred