Identifying N\(^6\)-methyladenosine sites using extreme gradient boosting system optimized by particle swarm optimizer
From MaRDI portal
Publication:1730106
DOI10.1016/J.JTBI.2019.01.035zbMath1409.92184OpenAlexW2913005526WikidataQ91316989 ScholiaQ91316989MaRDI QIDQ1730106
Minghao Yin, Xiaowei Zhao, Hongrui Zhang, Jinchao Ji, Ye Zhang, Qiao Ning
Publication date: 11 March 2019
Published in: Journal of Theoretical Biology (Search for Journal in Brave)
Full work available at URL: https://doi.org/10.1016/j.jtbi.2019.01.035
Approximation methods and heuristics in mathematical programming (90C59) Protein sequences, DNA sequences (92D20)
Uses Software
- Cell-PLoc
- pSuc-Lys
- XGBoost
- Prnam-PC
- iSuc-PseOpt
- iRSpot-PseDNC
- iRNA-Methyl
- iMethyl-PseAAC
- iSNO-AAPair
- iPTM-mLys
- pSumo-CD
- iCar-PseCp
- iHyd-PseCp
- iPhos-PseEvo
- iPhos-PseEn
- iRNA-AI
- pLoc-mAnimal
- pLoc-mVirus
- pLoc-mEuk
- iRNA-PseColl
- iRNA-2methyl
- iRNAm5C-PseDNC
- iRSpot-EL
- iPromoter-2L
- pLoc-mGneg
- pLoc-mPlant
- iKcr-PseEns
- iRNA-PseU
- iRNA-3typeA
- pLoc-mHum
- iDNA6mA-PseKNC
- iPPI-PseAAC
- 2L-piRNA
- iRO-3wPseKNC
- iHyd-PseAAC
- iRSpot-Pse6NC
- PSNO
- iLoc-lncRNA
- Fu-SulfPred
Cites Work
- pSuc-Lys: predict lysine succinylation sites in proteins with PseAAC and ensemble random forest approach
- Identifying 5-methylcytosine sites in RNA sequence using composite encoding feature into Chou's PseKNC
- Some remarks on protein attribute prediction and pseudo amino acid composition
- iMethyl-STTNC: identification of N\(^6\)-methyladenosine sites by extending the idea of SAAC into Chou's PseAAC to formulate RNA sequences
- iPPI-PseAAC(CGR): identify protein-protein interactions by incorporating chaos game representation into PseAAC
- Fu-SulfPred: identification of protein S-sulfenylation sites by fusing forests via Chou's general PseAAC
- Support-vector networks
- Nearest neighbor pattern classification
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