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swMATH9126MaRDI QIDQ21119

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Related Items (82)

Physics and chemistry-driven artificial neural network for predicting bioactivity of peptides and proteins and their design ⋮ Alignment-free prediction of mycobacterial DNA promoters based on pseudo-folding lattice network or star-graph topological indices ⋮ Use of fuzzy clustering technique and matrices to classify amino acids and its impact to Chou's pseudo amino acid composition ⋮ Multi-target QPDR classification model for human breast and colon cancer-related proteins using star graph topological indices ⋮ Prediction of protein structural classes by recurrence quantification analysis based on chaos game representation ⋮ Predicting DNA- and RNA-binding proteins from sequences with kernel methods ⋮ Donut-shaped fingerprint in homologous polypeptide relationships -- a topological feature related to pathogenic structural changes in conformational disease ⋮ Using the augmented Chou's pseudo amino acid composition for predicting protein submitochondria locations based on auto covariance approach ⋮ \(\gamma\)-turn types prediction in proteins using the two-stage hybrid neural discriminant model ⋮ Multiclass cancer classification by support vector machines with class-wise optimized genes and probability estimates ⋮ Structural relatedness via flow networks in protein sequence space ⋮ Predicting plant protein subcellular multi-localization by Chou's PseAAC formulation based multi-label homolog knowledge transfer learning ⋮ A method to distinguish between lysine acetylation and lysine methylation from protein sequences ⋮ Elman RNN based classification of proteins sequences on account of their mutual information ⋮ Annotating the protein-RNA interaction sites in proteins using evolutionary information and protein backbone structure ⋮ Comprehensive comparative analysis and identification of RNA-binding protein domains: multi-class classification and feature selection ⋮ SubChlo: predicting protein subchloroplast locations with pseudo-amino acid composition and the evidence-theoretic \(K\)-nearest neighbor (ET-KNN) algorithm ⋮ A network-QSAR model for prediction of genetic-component biomarkers in human colorectal cancer ⋮ The Burrows-Wheeler similarity distribution between biological sequences based on Burrows-Wheeler transform ⋮ Predict potential drug targets from the ion channel proteins based on SVM ⋮ Accurate in silico identification of protein succinylation sites using an iterative semi-supervised learning technique ⋮ Predicting Golgi-resident protein types using pseudo amino acid compositions: approaches with positional specific physicochemical properties ⋮ Predicting Gram-positive bacterial protein subcellular localization based on localization motifs ⋮ iCDI-PseFpt: identify the channel-drug interaction in cellular networking with PseAAC and molecular fingerprints ⋮ \textit{SVM} ensemble based transfer learning for large-scale membrane proteins discrimination ⋮ Robust feature generation for protein subchloroplast location prediction with a weighted GO transfer model ⋮ Predicting membrane protein types by fusing composite protein sequence features into pseudo amino acid composition ⋮ Some remarks on protein attribute prediction and pseudo amino acid composition ⋮ Naïve Bayes classifier with feature selection to identify phage virion proteins ⋮ NL MIND-BEST: a web server for ligands and proteins discovery -- theoretic-experimental study of proteins of \textit{Giardia lamblia} and new compounds active against \textit{Plasmodium falciparum} ⋮ Feature extraction by statistical contact potentials and wavelet transform for predicting subcellular localizations in gram negative bacterial proteins ⋮ Gram-positive and Gram-negative protein subcellular localization by incorporating evolutionary-based descriptors into Chou's general PseAAC ⋮ Protein fold recognition by alignment of amino acid residues using kernelized dynamic time warping ⋮ Constructing a linear QSAR for some metabolizable drugs by human or pig flavin-containing monooxygenases using some molecular features selected by a genetic algorithm trained SVM ⋮ Neural network and SVM classifiers accurately predict lipid binding proteins, irrespective of sequence homology ⋮ Human proteins characterization with subcellular localizations ⋮ Prediction of protein-protein interaction types using the decision templates based on multiple classier fusion ⋮ PSSM-Suc: accurately predicting succinylation using position specific scoring matrix into bigram for feature extraction ⋮ Prediction of metastasis in advanced colorectal carcinomas using CGH data ⋮ pLoc\_bal-mGneg: predict subcellular localization of Gram-negative bacterial proteins by quasi-balancing training dataset and general PseAAC ⋮ iMethyl-STTNC: identification of N\(^6\)-methyladenosine sites by extending the idea of SAAC into Chou's PseAAC to formulate RNA sequences ⋮ CE-PLoc: An ensemble classifier for predicting protein subcellular locations by fusing different modes of pseudo amino acid composition ⋮ Characterization of structure-antioxidant activity relationship of peptides in free radical systems using QSAR models: key sequence positions and their amino acid properties ⋮ Predicting promoters by pseudo-trinucleotide compositions based on discrete wavelets transform ⋮ A feature extraction technique using bi-gram probabilities of position specific scoring matrix for protein fold recognition ⋮ Using the concept of Chou's pseudo amino acid composition for risk type prediction of human papillomaviruses ⋮ Prediction of the parallel/antiparallel orientation of beta-strands using amino acid pairing preferences and support vector machines ⋮ Gneg-mPLoc: a top-down strategy to enhance the quality of predicting subcellular localization of Gram-negative bacterial proteins ⋮ MFSC: multi-voting based feature selection for classification of Golgi proteins by adopting the general form of Chou's PseAAC components ⋮ Identification of protein subcellular localization via integrating evolutionary and physicochemical information into Chou's general PseAAC ⋮ Protein classification using texture descriptors extracted from the protein backbone image ⋮ A classification-based prediction model of messenger RNA polyadenylation sites ⋮ A simple method to analyze the similarity of biological sequences based on the fuzzy theory ⋮ High performance set of PseAAC and sequence based descriptors for protein classification ⋮ Molecular modeling of BAD complex resided in a mitochondrion integrating glycolysis and apoptosis ⋮ Knowledge-based computational mutagenesis for predicting the disease potential of human non-synonymous single nucleotide polymorphisms ⋮ Identifying N\(^6\)-methyladenosine sites using extreme gradient boosting system optimized by particle swarm optimizer ⋮ A study of entropy/clarity of genetic sequences using metric spaces and fuzzy sets ⋮ Predicting ion channels and their types by the dipeptide mode of pseudo amino acid composition ⋮ Prediction of protein submitochondria locations based on data fusion of various features of sequences ⋮ Phylogenetic analysis of DNA sequences based on the generalized pseudo-amino acid composition ⋮ A new hybrid fractal algorithm for predicting thermophilic nucleotide sequences ⋮ Multi-kernel transfer learning based on Chou's PseAAC formulation for protein submitochondria localization ⋮ Prediction of protein-protein interaction sites using patch-based residue characterization ⋮ Two-intermediate model to characterize the structure of fast-folding proteins ⋮ Predicting mycobacterial proteins subcellular locations by incorporating pseudo-average chemical shift into the general form of Chou's pseudo amino acid composition ⋮ A segmented principal component analysis -- regression approach to QSAR study of peptides ⋮ RFCRYS: sequence-based protein crystallization propensity prediction by means of random forest ⋮ \textbf{iLoc-Virus}: a multi-label learning classifier for identifying the subcellular localization of virus proteins with both single and multiple sites ⋮ BacPP: bacterial promoter prediction -- a tool for accurate sigma-factor specific assignment in enterobacteria ⋮ \textit{In vitro} transcriptomic prediction of hepatotoxicity for early drug discovery ⋮ Discriminating bioluminescent proteins by incorporating average chemical shift and evolutionary information into the general form of Chou's pseudo amino acid composition ⋮ Interrogating noise in protein sequences from the perspective of protein-protein interactions prediction ⋮ Enzymes/non-enzymes classification model complexity based on composition, sequence, 3D and topological indices ⋮ Predicting protein structural classes with pseudo amino acid composition: an approach using geometric moments of cellular automaton image ⋮ Natural/random protein classification models based on star network topological indices ⋮ Prediction of Golgi-resident protein types using general form of Chou's pseudo-amino acid compositions: approaches with minimal redundancy maximal relevance feature selection ⋮ Identify five kinds of simple super-secondary structures with quadratic discriminant algorithm based on the chemical shifts ⋮ mLASSO-Hum: a LASSO-based interpretable human-protein subcellular localization predictor ⋮ Classification of membrane protein types using voting feature interval in combination with Chou's pseudo amino acid composition ⋮ GOASVM: a subcellular location predictor by incorporating term-frequency gene ontology into the general form of Chou's pseudo-amino acid composition ⋮ Discrimination of acidic and alkaline enzyme using Chou's pseudo amino acid composition in conjunction with probabilistic neural network model

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