A method to distinguish between lysine acetylation and lysine methylation from protein sequences

DOI10.1016/J.JTBI.2012.06.030MaRDI QIDQ292799zbMATH OpenOpenAlexWikidataFDO

Authors Shao-Ping Shi, Jian-Ding Qiu, Xing-Yu Sun, Sheng-Bao Suo, Shu-Yun Huang, Ru-Ping Liang

Publication date 9 June 2016

Published in Journal of Theoretical Biology (Search for Journal in Brave)

Full work available at URL https://doi.org/10.1016/j.jtbi.2012.06.030

zbMATH Keywords

aacetyl-lysineencoding based on grouped weightmethyl-lysineposition weight amino acid compositionsecondary structure

Mathematics Subject Classification ID

Biochemistry, molecular biology (92C40) Protein sequences, DNA sequences (92D20)

Recommendations

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Cites work

• scientific article; zbMATH DE number 823069 (Why is no real title available?)
• Lysine acetylation sites prediction using an ensemble of support vector machine classifiers
• Some remarks on protein attribute prediction and pseudo amino acid composition
• The modified Mahalanobis discriminant for predicting outer membrane proteins by using Chou's pseudo amino acid composition
• Use of fuzzy clustering technique and matrices to classify amino acids and its impact to Chou's pseudo amino acid composition

Cited in

(5)

• Efficacy of function specific 3D-motifs in enzyme classification according to their EC-numbers
• A feature extraction technique using bi-gram probabilities of position specific scoring matrix for protein fold recognition
• Lysine acetylation sites prediction using an ensemble of support vector machine classifiers
• Predicting protein-protein interactions by fusing various Chou's pseudo components and using wavelet denoising approach
• Prediction and functional analysis of prokaryote lysine acetylation site by incorporating six types of features into Chou's general PseAAC

Describes a project that uses

Uses Software

• PLMLA
• QuickGO
• EnsemblePail
• BLAST
• PSI-BLAST
• WebLogo
• Cd-hit
• Cell-PLoc
• LIBSVM

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