Cited in
(only showing first 100 items - show all)- iPHLoc-ES: identification of bacteriophage protein locations using evolutionary and structural features
- Better spaced seeds using quadratic residues
- Synergy of multi-label hierarchical ensembles, data fusion, and cost-sensitive methods for gene functional inference
- New motifs within the NB-ARC domain of R proteins: probable mechanisms of integration of geminiviral signatures within the host species of fabaceae family and implications in conferring disease resistance
- Randomized probe selection algorithm for microarray design
- Distributed and sequential algorithms for bioinformatics
- Co-evolution and information signals in biological sequences
- GeneGrid: Architecture, implementation and application
- Sequence-based discrimination of protein-RNA interacting residues using a probabilistic approach
- An efficient genomic signature ranking method for genomic island prediction from a single genome
- NL MIND-BEST: a web server for ligands and proteins discovery -- theoretic-experimental study of proteins of \textit{Giardia lamblia} and new compounds active against \textit{Plasmodium falciparum}
- Biclustering scatter plots using data depth measures
- Prediction of subcellular location of apoptosis proteins combining tri-Gram encoding based on PSSM and recursive feature elimination
- Application of max-plus algebra to biological sequence comparisons
- Fast and deterministic constant factor approximation algorithms for LCS imply new circuit lower bounds
- Tighter connections between Formula-SAT and shaving logs
- DUC-curve, a highly compact 2D graphical representation of DNA sequences and its application in sequence alignment
- Sequence-based prediction of protein-protein interaction sites with L1-logreg classifier
- Fast profile matching algorithms - A survey
- Sequence graph transform (SGT): a feature embedding function for sequence data mining
- Numerical characteristics of word frequencies and their application to dissimilarity measure for sequence comparison
- A coprocessor architecture for fast protein structure prediction
- SVM-based detection of distant protein structural relationships using pairwise probabilistic suffix trees
- Unraveling the nature of the segmentation clock: Intrinsic disorder of clock proteins and their interaction map
- Finite-size corrections to Poisson approximations in general renewal-success processes
- Walking through protein sequence space
- Asymptotics for local maximal stack scores with general loop penalty function
- Comparative analysis of protein primary sequences with graph energy
- ECS: an automatic enzyme classifier based on functional domain composition
- A methanogen hosted the origin of the genetic code
- A scheme for multiple sequence alignment optimization -- an improvement based on family representative mechanics features
- Extreme value theory in some statistical analysis of genomic sequences
- Fine-grained parallel RNA secondary structure prediction using SCFGs on FPGA
- Proteome-wide classification and identification of mammalian-type GPCRs by binary topology pattern
- A method to distinguish between lysine acetylation and lysine methylation from protein sequences
- Predicting plant protein subcellular multi-localization by Chou's PseAAC formulation based multi-label homolog knowledge transfer learning
- scientific article; zbMATH DE number 7375961 (Why is no real title available?)
- PSIST: a scalable approach to indexing protein structures using suffix trees
- Annotating the protein-RNA interaction sites in proteins using evolutionary information and protein backbone structure
- The ribosome as a missing link in the evolution of life
- A randomized numerical aligner (rNA)
- \textit{SVM} ensemble based transfer learning for large-scale membrane proteins discrimination
- An \textit{in silico} exploration of the neutral network in protein sequence space
- Predicting Golgi-resident protein types using pseudo amino acid compositions: approaches with positional specific physicochemical properties
- scientific article; zbMATH DE number 2241899 (Why is no real title available?)
- A method for discovering transmembrane beta-barrel proteins in Gram-negative bacterial proteomes
- A feature vector integration approach for a generalized support vector machine pairwise homology algorithm
- In silico analyses of a new group of fungal and plant RecQ4-homologous proteins
- Efficient perturbation analysis of elastic network models -- application to acetylcholinesterase of T. Californica
- Application of complex demodulation on bZIP and bHLH-PAS protein domains
- Structuring of the genetic code took place at acidic pH
- The evolution of the genetic code took place in an anaerobic environment
- Sequence-based predictor of ATP-binding residues using random forest and mrmr-IFS feature selection
- Bayesian data integration and enrichment analysis for predicting gene function in malaria
- An efficient similarity search based on indexing in large DNA databases
- Power analysis of database search using multiple scoring matrices
- Path reversal, islands, and the gapped alignment of random sequences
- Customized plug-in modules in metascheduler CSF4 for life sciences applications
- Phylogenetic distribution of DNA-binding transcription factors in bacteria and archaea
- Cooperative ``folding transition in the sequence space facilitates function-driven evolution of protein families
- A new protein graph model for function prediction
- Comparative protein structure modeling in genomics
- The combinatorics and extreme value statistics of protein threading
- eXist
- IntelliGEN
- BioGRID
- MultiProt
- GeneGrid
- COSMOS
- SVMlight
- svmPRAT
- SNAP
- MrBayes
- MetaCyc
- MAFFT
- BioHEL
- tRNAscan-SE
- DYANA
- BLAST++
- Gbtk
- CAP3
- ScalaBLAST
- Cell-PLoc
- Soap
- MEGA
- RAPTOR
- SSAP
- AutoDock
- CSF4
- FASTA
- GridBlast
- mpiBLAST
- PackageBLAST
- PyMOL
- bioperl
- HMMER
- Chimera
- Cluster-C
- EMBOSS
- JIGSAW
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