Cell-PLoc
From MaRDI portal
Cited in
(only showing first 100 items - show all)- STATISTICA
- Physics and chemistry-driven artificial neural network for predicting bioactivity of peptides and proteins and their design
- Alignment-free prediction of mycobacterial DNA promoters based on pseudo-folding lattice network or star-graph topological indices
- Use of fuzzy clustering technique and matrices to classify amino acids and its impact to Chou's pseudo amino acid composition
- Multi-target QPDR classification model for human breast and colon cancer-related proteins using star graph topological indices
- Prediction of protein structural classes by recurrence quantification analysis based on chaos game representation
- Predicting DNA- and RNA-binding proteins from sequences with kernel methods
- Donut-shaped fingerprint in homologous polypeptide relationships -- a topological feature related to pathogenic structural changes in conformational disease
- COSMOS
- Using the augmented Chou's pseudo amino acid composition for predicting protein submitochondria locations based on auto covariance approach
- \(\gamma\)-turn types prediction in proteins using the two-stage hybrid neural discriminant model
- Multiclass cancer classification by support vector machines with class-wise optimized genes and probability estimates
- Structural relatedness via flow networks in protein sequence space
- SubChlo: predicting protein subchloroplast locations with pseudo-amino acid composition and the evidence-theoretic \(K\)-nearest neighbor (ET-KNN) algorithm
- A network-QSAR model for prediction of genetic-component biomarkers in human colorectal cancer
- The Burrows-Wheeler similarity distribution between biological sequences based on Burrows-Wheeler transform
- Predict potential drug targets from the ion channel proteins based on SVM
- Predicting membrane protein types by fusing composite protein sequence features into pseudo amino acid composition
- Some remarks on protein attribute prediction and pseudo amino acid composition
- PSSM-Suc: accurately predicting succinylation using position specific scoring matrix into bigram for feature extraction
- LIBSVM
- Prediction of metastasis in advanced colorectal carcinomas using CGH data
- pLoc\_bal-mGneg: predict subcellular localization of Gram-negative bacterial proteins by quasi-balancing training dataset and general PseAAC
- iMethyl-STTNC: identification of N\(^6\)-methyladenosine sites by extending the idea of SAAC into Chou's PseAAC to formulate RNA sequences
- Characterization of structure-antioxidant activity relationship of peptides in free radical systems using QSAR models: key sequence positions and their amino acid properties
- Predicting promoters by pseudo-trinucleotide compositions based on discrete wavelets transform
- A feature extraction technique using bi-gram probabilities of position specific scoring matrix for protein fold recognition
- Using the concept of Chou's pseudo amino acid composition for risk type prediction of human papillomaviruses
- Prediction of the parallel/antiparallel orientation of beta-strands using amino acid pairing preferences and support vector machines
- Gneg-mPLoc: a top-down strategy to enhance the quality of predicting subcellular localization of Gram-negative bacterial proteins
- MFSC: multi-voting based feature selection for classification of Golgi proteins by adopting the general form of Chou's PseAAC components
- Identification of protein subcellular localization via integrating evolutionary and physicochemical information into Chou's general PseAAC
- Protein classification using texture descriptors extracted from the protein backbone image
- A classification-based prediction model of messenger RNA polyadenylation sites
- A simple method to analyze the similarity of biological sequences based on the fuzzy theory
- High performance set of PseAAC and sequence based descriptors for protein classification
- Molecular modeling of BAD complex resided in a mitochondrion integrating glycolysis and apoptosis
- Knowledge-based computational mutagenesis for predicting the disease potential of human non-synonymous single nucleotide polymorphisms
- Identifying N^6-methyladenosine sites using extreme gradient boosting system optimized by particle swarm optimizer
- A study of entropy/clarity of genetic sequences using metric spaces and fuzzy sets
- Two-intermediate model to characterize the structure of fast-folding proteins
- Predicting mycobacterial proteins subcellular locations by incorporating pseudo-average chemical shift into the general form of Chou's pseudo amino acid composition
- A segmented principal component analysis -- regression approach to QSAR study of peptides
- RFCRYS: sequence-based protein crystallization propensity prediction by means of random forest
- \textbf{iLoc-Virus}: a multi-label learning classifier for identifying the subcellular localization of virus proteins with both single and multiple sites
- BacPP: bacterial promoter prediction -- a tool for accurate sigma-factor specific assignment in enterobacteria
- \textit{In vitro} transcriptomic prediction of hepatotoxicity for early drug discovery
- Discriminating bioluminescent proteins by incorporating average chemical shift and evolutionary information into the general form of Chou's pseudo amino acid composition
- Interrogating noise in protein sequences from the perspective of protein-protein interactions prediction
- Enzymes/non-enzymes classification model complexity based on composition, sequence, 3D and topological indices
- Predicting protein structural classes with pseudo amino acid composition: an approach using geometric moments of cellular automaton image
- Natural/random protein classification models based on star network topological indices
- Predicting ion channels and their types by the dipeptide mode of pseudo amino acid composition
- Prediction of protein submitochondria locations based on data fusion of various features of sequences
- Phylogenetic analysis of DNA sequences based on the generalized pseudo-amino acid composition
- A new hybrid fractal algorithm for predicting thermophilic nucleotide sequences
- Multi-kernel transfer learning based on Chou's PseAAC formulation for protein submitochondria localization
- Prediction of protein-protein interaction sites using patch-based residue characterization
- HPAM
- Psortb
- GOASVM: a subcellular location predictor by incorporating term-frequency gene ontology into the general form of Chou's pseudo-amino acid composition
- Discrimination of acidic and alkaline enzyme using Chou's pseudo amino acid composition in conjunction with probabilistic neural network model
- PoPS
- NL MIND-BEST: a web server for ligands and proteins discovery -- theoretic-experimental study of proteins of \textit{Giardia lamblia} and new compounds active against \textit{Plasmodium falciparum}
- Feature extraction by statistical contact potentials and wavelet transform for predicting subcellular localizations in gram negative bacterial proteins
- Gram-positive and Gram-negative protein subcellular localization by incorporating evolutionary-based descriptors into Chou's general PseAAC
- Protein fold recognition by alignment of amino acid residues using kernelized dynamic time warping
- Constructing a linear QSAR for some metabolizable drugs by human or pig flavin-containing monooxygenases using some molecular features selected by a genetic algorithm trained SVM
- Neural network and SVM classifiers accurately predict lipid binding proteins, irrespective of sequence homology
- Human proteins characterization with subcellular localizations
- ProSOM
- ToMoCoMD-CARDD
- SYBYL
- Accurate in silico identification of protein succinylation sites using an iterative semi-supervised learning technique
- Predicting Gram-positive bacterial protein subcellular localization based on localization motifs
- iCDI-PseFpt: identify the channel-drug interaction in cellular networking with PseAAC and molecular fingerprints
- \textit{SVM} ensemble based transfer learning for large-scale membrane proteins discrimination
- Robust feature generation for protein subchloroplast location prediction with a weighted GO transfer model
- ProTherm
- mLASSO-Hum
- PseAAC
- Nuc-ploc
- Memtype-2L
- iNuc-PseKNC
- ProtIdent
- PISCES
- AUTO-MUTE
- Cd-hit
- FUGUE
- Porter
- ParCrys
- CRYSTALP2
- PROFEAT
- BaCelLo
- SMART
- WebLogo
- PSI-BLAST
- BLAST
- InterProScan
- Predicting plant protein subcellular multi-localization by Chou's PseAAC formulation based multi-label homolog knowledge transfer learning
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