mLASSO-Hum: a LASSO-based interpretable human-protein subcellular localization predictor

DOI10.1016/J.JTBI.2015.06.042MaRDI QIDQ739351zbMATH OpenOpenAlexWikidataFDO

Authors Shibiao Wan, Man-Wai Mak, S. Y. Kung

Publication date 18 August 2016

Published in Journal of Theoretical Biology (Search for Journal in Brave)

Full work available at URL https://doi.org/10.1016/j.jtbi.2015.06.042

zbMATH Keywords

sparse solutionsmulti-label classificationprotein subcellular localizationdepth-dependent informationinterpretable prediction

Mathematics Subject Classification ID

Biochemistry, molecular biology (92C40) Cell biology (92C37)

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Cites work

• scientific article; zbMATH DE number 845714 (Why is no real title available?)
• GOASVM: a subcellular location predictor by incorporating term-frequency gene ontology into the general form of Chou's pseudo-amino acid composition
• Gneg-mPLoc: a top-down strategy to enhance the quality of predicting subcellular localization of Gram-negative bacterial proteins
• Gram-positive and Gram-negative protein subcellular localization by incorporating evolutionary-based descriptors into Chou's general PseAAC
• Least angle regression. (With discussion)
• On label dependence and loss minimization in multi-label classification
• Predicting enzyme family classes by hybridizing gene product composition and pseudo-amino acid composition
• R3P-Loc: a compact multi-label predictor using ridge regression and random projection for protein subcellular localization
• Some remarks on protein attribute prediction and pseudo amino acid composition
• The elements of statistical learning. Data mining, inference, and prediction
• \textbf{iLoc-Virus}: a multi-label learning classifier for identifying the subcellular localization of virus proteins with both single and multiple sites

Cited in

(1)

• R3P-Loc: a compact multi-label predictor using ridge regression and random projection for protein subcellular localization

Describes a project that uses

Uses Software

• QuickGO
• Euk-mPLoc
• EpiLoc
• YLoc
• iNitro-Tyr
• GOASVM
• Plant-mPLoc
• iLoc-Hum
• iLoc-Gpos
• iLoc-Virus
• Pse-in-One
• MultiP-SChlo
• mLASSO-Hum
• Cell-PLoc

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