Pfam
From MaRDI portal
Cited in
(only showing first 100 items - show all)- Fast embedding methods for clustering tens of thousands of sequences
- The metabolic pH response in Lactococcus lactis: An integrative experimental and modelling approach
- A hidden Markov model applied to the protein 3D structure analysis
- Comparative protein structure modeling in genomics
- Approximate symbolic pattern matching for protein sequence data
- Predicting protein fold pattern with functional domain and sequential evolution information
- Refining cellular pathway models using an ensemble of heterogeneous data sources
- The first peptides: the evolutionary transition between prebiotic amino acids and early proteins
- On application of directons to functional classification of genes in prokaryotes
- Computation of mutual information from hidden Markov models
- Cooperative ``folding transition in the sequence space facilitates function-driven evolution of protein families
- Non-linear models based on simple topological indices to identify RNase III protein members
- Some remarks on protein attribute prediction and pseudo amino acid composition
- Mathematical basis of improved protein subfamily classification by a HMM-based sequence filter
- Bioinformatics. Volume II: structure, function, and applications
- Gneg-mPLoc: a top-down strategy to enhance the quality of predicting subcellular localization of Gram-negative bacterial proteins
- \textit{In silico} analysis of \textit{plasmodium falciparum} CDPK5 protein through molecular modeling, docking and dynamics
- An efficient genomic signature ranking method for genomic island prediction from a single genome
- Towards a comprehensive collection of diagnostic patterns for protein sequence classification
- The consensus string problem and the complexity of comparing hidden Markov models.
- TRANSPATH
- Automatic topography of high-dimensional data sets by non-parametric density peak clustering
- BioProspector
- Nomad
- mpiBLAST
- Solvent accessibility, residue charge and residue volume, the three ingredients of a robust amino acid substitution matrix
- Testing statistical hypothesis on random trees and applications to the protein classification problem
- Cluster-C
- GOstat
- Psortb
- Sequence annotation with HMMs: new problems and their complexity
- 3DCoffee
- DIALIGN
- ClustalW
- Chou's pseudo amino acid composition improves sequence-based antifreeze protein prediction
- Fast detection of common sequence structure patterns in RNAs
- ECS: an automatic enzyme classifier based on functional domain composition
- Neighborhood functions and hill-climbing strategies dedicated to the generalized ungapped local multiple alignment
- Compressing table data with column dependency
- Potential drug targets in Mycobacterium tuberculosis through metabolic pathway analysis
- A proteome-wide analysis of domain architectures of prokaryotic single-spanning transmembrane proteins
- Construction and characterization of a rock-cluster-based EST analysis pipeline
- MoDEL: an efficient strategy for ungapped local multiple alignment
- The iProClass integrated database for protein functional analysis
- Analyzing functional similarity of protein sequences with discrete wavelet transform
- Pattern-constrained multiple polypeptide sequence alignment
- Operon prediction based on SVM
- MUSCLE
- LTR_FINDER
- KEGG
- Discovering short linear protein motif based on selective training of profile hidden Markov models
- Predicting DNA binding proteins using support vector machine with hybrid fractal features
- FASTA3
- Rose
- AUTO-MUTE
- PROCHECK
- FUGUE
- PSICOV
- ELM
- PartTree
- GeneMark
- INCLUSive
- AutoFACT
- SMART
- On the entropy of protein families
- TRANSFAC
- Profunc
- HHpred
- PSI-BLAST
- PROSITE
- BLAST
- InterProScan
- Protein domain hierarchy Gibbs sampling strategies
- SWISS-MODEL
- BioGRID
- Elman RNN based classification of proteins sequences on account of their mutual information
- PconsC
- Fast error-tolerant quartet phylogeny algorithms
- UniProt
- IntAct
- PANTHER
- Jalview
- COMPASS
- ChEMBL
- Fast pseudolikelihood maximization for direct-coupling analysis of protein structure from many homologous amino-acid sequences
- MetaSim
- ExonHunter
- PAGE
- DrugBank
- ONE
- zt
- PIPE
- YASARA
- MODELLER
- LORIS
- MMseqs2
- Bioconda
- iPfam
- Blast2GO
- SigHunt
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