Some operations research methods for analyzing protein sequences and structures
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Publication:5900888
DOI10.1007/s10479-009-0652-yzbMath1185.92045OpenAlexW1986290387WikidataQ57387740 ScholiaQ57387740MaRDI QIDQ5900888
Jacek Błażewicz, Piotr Lukasiak, Maciej Miłostan
Publication date: 10 May 2010
Published in: Annals of Operations Research (Search for Journal in Brave)
Full work available at URL: https://doi.org/10.1007/s10479-009-0652-y
Applications of mathematical programming (90C90) Biochemistry, molecular biology (92C40) Operations research and management science (90B99) Systems biology, networks (92C42)
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Cites Work
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- Selected combinatorial problems of computational biology
- Self-organized formation of topologically correct feature maps
- Compact optimization can outperform separation: a case study in structural proteomics
- Large-scale linear programming techniques for the design of protein folding potentials
- An optimization approach to the problem of protein structure prediction
- Protein threading by linear programming: theoretical analysis and computational results
- Hierarchical clustering schemes
- Cluster-C, an algorithm for the large-scale clustering of protein sequences based on the extraction of maximal cliques
- Opportunities for Combinatorial Optimization in Computational Biology
- Global Optimization of Morse Clusters by Potential Energy Transformations
- A Semidefinite Programming Approach to Side Chain Positioning with New Rounding Strategies
- Protein Threading: From Mathematical Models to Parallel Implementations
- Biological Sequence Analysis
- Side Chain-Positioning as an Integer Programming Problem
- Optimal Protein Structure Alignment Using Maximum Cliques
- Statistical Inference for Probabilistic Functions of Finite State Markov Chains
- Some operations research methods for analyzing protein sequences and structures
- Role and results of statistical methods in protein fold class prediction
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