Cited in
(only showing first 100 items - show all)- Synergy of multi-label hierarchical ensembles, data fusion, and cost-sensitive methods for gene functional inference
- Solvent accessibility, residue charge and residue volume, the three ingredients of a robust amino acid substitution matrix
- Fast error-tolerant quartet phylogeny algorithms
- Compressing table data with column dependency
- A hidden Markov model applied to the protein 3D structure analysis
- Approximate symbolic pattern matching for protein sequence data
- An efficient genomic signature ranking method for genomic island prediction from a single genome
- Variational Bayes via propositionalized probability computation in PRISM
- Refining cellular pathway models using an ensemble of heterogeneous data sources
- ECS: an automatic enzyme classifier based on functional domain composition
- Sequence annotation with HMMs: new problems and their complexity
- Fast detection of common sequence structure patterns in RNAs
- The first peptides: the evolutionary transition between prebiotic amino acids and early proteins
- Computation of mutual information from hidden Markov models
- Neighborhood functions and hill-climbing strategies dedicated to the generalized ungapped local multiple alignment
- Automatic topography of high-dimensional data sets by non-parametric density peak clustering
- On the entropy of protein families
- MoDEL: an efficient strategy for ungapped local multiple alignment
- Discovering short linear protein motif based on selective training of profile hidden Markov models
- Towards a comprehensive collection of diagnostic patterns for protein sequence classification
- Elman RNN based classification of proteins sequences on account of their mutual information
- A hyper-heuristic for the longest common subsequence problem
- Fast embedding methods for clustering tens of thousands of sequences
- The consensus string problem and the complexity of comparing hidden Markov models.
- Cooperative ``folding transition in the sequence space facilitates function-driven evolution of protein families
- Comparative protein structure modeling in genomics
- Predicting protein fold pattern with functional domain and sequential evolution information
- Protein model refinement using structural fragment tessellation
- Some remarks on protein attribute prediction and pseudo amino acid composition
- TRANSPATH
- BioProspector
- Nomad
- mpiBLAST
- Cluster-C
- GOstat
- Psortb
- 3DCoffee
- ClustalW
- DIALIGN
- SMART
- BLAST
- LTR_FINDER
- MUSCLE
- BioGRID
- KEGG
- FASTA3
- Rose
- AUTO-MUTE
- FUGUE
- ELM
- PROCHECK
- AutoFACT
- PSICOV
- GeneMark
- INCLUSive
- PartTree
- HHpred
- Profunc
- InterProScan
- PSI-BLAST
- PROSITE
- TRANSFAC
- SWISS-MODEL
- A matrix based algorithm for protein-protein interaction prediction using domain-domain associations
- COMPASS
- PconsC
- IntAct
- UniProt
- ChEMBL
- Jalview
- PANTHER
- MetaSim
- ExonHunter
- DrugBank
- PAGE
- ONE
- PIPE
- zt
- MODELLER
- YASARA
- Bioconda
- LORIS
- MMseqs2
- iPfam
- Blast2GO
- BranchClust
- HCGene
- IslandViewer
- SigHunt
- MEGAN
- BioPhysConnectoR
- EFICAz
- cPath
- phyloXML
- NestedMICA
- QPath
- Scoredist
- TACOA
- Q-SiteFinder
- HMMGEP
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