Pfam

swMATH23108MaRDI QIDQ34892FDOQ34892

Author name not available (Why is that?)

Cited In (56)

• Discovering short linear protein motif based on selective training of profile hidden Markov models
• Statistical correction for functional metagenomic profiling of a microbial community with short NGS reads
• A hybrid method for protein sequence modeling with improved accuracy
• Solvent accessibility, residue charge and residue volume, the three ingredients of a robust amino acid substitution matrix
• Compressing table data with column dependency
• Synergy of multi-label hierarchical ensembles, data fusion, and cost-sensitive methods for gene functional inference
• A hidden Markov model applied to the protein 3D structure analysis
• Approximate symbolic pattern matching for protein sequence data
• An efficient genomic signature ranking method for genomic island prediction from a single genome
• Variational Bayes via propositionalized probability computation in PRISM
• Refining cellular pathway models using an ensemble of heterogeneous data sources
• ECS: an automatic enzyme classifier based on functional domain composition
• Sequence annotation with HMMs: new problems and their complexity
• Fast detection of common sequence structure patterns in RNAs
• The first peptides: the evolutionary transition between prebiotic amino acids and early proteins
• Computation of mutual information from hidden Markov models
• Neighborhood functions and hill-climbing strategies dedicated to the generalized ungapped local multiple alignment
• MoDEL: an efficient strategy for ungapped local multiple alignment
• Automatic topography of high-dimensional data sets by non-parametric density peak clustering
• On the entropy of protein families
• Towards a comprehensive collection of diagnostic patterns for protein sequence classification
• Elman RNN based classification of proteins sequences on account of their mutual information
• A hyper-heuristic for the longest common subsequence problem
• Fast embedding methods for clustering tens of thousands of sequences
• Title not available (Why is that?)
• The consensus string problem and the complexity of comparing hidden Markov models.
• Cooperative ``folding transition in the sequence space facilitates function-driven evolution of protein families
• Comparative protein structure modeling in genomics
• Predicting protein fold pattern with functional domain and sequential evolution information
• Protein model refinement using structural fragment tessellation
• Some remarks on protein attribute prediction and pseudo amino acid composition
• Potential drug targets in Mycobacterium tuberculosis through metabolic pathway analysis
• A matrix based algorithm for protein-protein interaction prediction using domain-domain associations
• The iProClass integrated database for protein functional analysis
• On application of directons to functional classification of genes in prokaryotes
• Analyzing functional similarity of protein sequences with discrete wavelet transform
• The metabolic pH response in Lactococcus lactis: An integrative experimental and modelling approach
• Non-linear models based on simple topological indices to identify RNase III protein members
• Protein domain hierarchy Gibbs sampling strategies
• Some operations research methods for analyzing protein sequences and structures
• Fast Error-Tolerant Quartet Phylogeny Algorithms
• Operon prediction based on SVM
• The EM algorithm and the rise of computational biology
• Mathematical basis of improved protein subfamily classification by a HMM-based sequence filter
• Fast pseudolikelihood maximization for direct-coupling analysis of protein structure from many homologous amino-acid sequences
• A proteome-wide analysis of domain architectures of prokaryotic single-spanning transmembrane proteins
• Construction and characterization of a rock-cluster-based EST analysis pipeline
• Bioinformatics. Volume II: structure, function, and applications
• Predicting DNA binding proteins using support vector machine with hybrid fractal features
• Chou's pseudo amino acid composition improves sequence-based antifreeze protein prediction
• Pattern-constrained multiple polypeptide sequence alignment
• Applications of domain-domain interactions in pathway study
• Multiple sequence alignment using the hidden Markov model trained by an improved quantum-behaved particle swarm optimization
• Testing statistical hypothesis on random trees and applications to the protein classification problem
• Gneg-mPLoc: a top-down strategy to enhance the quality of predicting subcellular localization of Gram-negative bacterial proteins
• \textit{In silico} analysis of \textit{plasmodium falciparum} CDPK5 protein through molecular modeling, docking and dynamics

This page was built for software: Pfam