Multiple sequence alignment using the hidden Markov model trained by an improved quantum-behaved particle swarm optimization

DOI10.1016/J.INS.2010.11.014MaRDI QIDQ713079zbMATH OpenOpenAlexFDO

Authors D. Kharzeev

Publication date 26 October 2012

Published in Information Sciences (Search for Journal in Brave)

Full work available at URL https://doi.org/10.1016/j.ins.2010.11.014

zbMATH Keywords

hidden Markov modelparameter optimizationmultiple sequence alignmentpopulation diversityquantum-behaved particle swarm optimization

Mathematics Subject Classification ID

Problem solving in the context of artificial intelligence (heuristics, search strategies, etc.) (68T20) Biochemistry, molecular biology (92C40) Quantum algorithms and complexity in the theory of computing (68Q12)

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Cites work

• A Maximization Technique Occurring in the Statistical Analysis of Probabilistic Functions of Markov Chains
• Complex system fault diagnosis based on a fuzzy robust wavelet support vector classifier and an adaptive Gaussian particle swarm optimization
• Multi-objective particle swarm optimization with time variant inertia and acceleration coefficients
• Multi-strategy ensemble particle swarm optimization for dynamic optimization
• Online Learning with Hidden Markov Models
• Optimisation of HMM topology and its model parameters by genetic algorithms
• Optimizing the codon usage of synthetic gene with QPSO algorithm
• Swarm-based translation-invariant morphological prediction method for financial time series forecasting
• Using quantum-behaved particle swarm optimization algorithm to solve non-linear programming problems

Cited in

(7)

• Hidden Markov models training by a particle swarm optimization algorithm
• Brief introduction to self-adapting hidden Markov model program for multiple sequences alignment
• Hidden Markov Models Training Using Population-based Metaheuristics
• Local path planning for unmanned surface vehicle collision avoidance based on modified quantum particle swarm optimization
• AI 2005: Advances in Artificial Intelligence
• A quantum-inspired vortex search algorithm with application to function optimization
• A finite-time particle swarm optimization algorithm for odor source localization

Describes a project that uses

Uses Software

• Pfam
• Rose
• ClustalW

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