Cited in
(41)- Fast algorithm for extracting multiple unordered short motifs using bit operations
- Detection of over-represented motifs corresponding to known TFBSs via motif clustering and matching
- Computational Biology: Toward Deciphering Gene Regulatory Information in Mammalian Genomes
- Missing pattern discovery
- Context dependent models for discovery of transcription factor binding sites
- Neighborhood functions and hill-climbing strategies dedicated to the generalized ungapped local multiple alignment
- MoDEL: an efficient strategy for ungapped local multiple alignment
- An efficient algorithm for deciphering regulatory motifs
- Generalized Hierarchical Markov Models for the Discovery of Length‐Constrained Sequence Features from Genome Tiling Arrays
- A transdimensional Bayesian model for pattern recognition in DNA sequences
- Footprinter
- GenRGenS
- MotifCM
- Nomad
- PhyloGibbs
- MEME
- BioOptimizer
- GAME
- TRANSFAC
- WebLogo
- JASPAR
- MatInspector
- MotifVoter
- TileMap
- CisModule
- PhyME
- TEIRESIAS
- COMODE
- cosmoGUI
- Kangaroo
- Transcription factor binding sites detection by using alignment-based approach
- Supervised Detection of Regulatory Motifs in DNA Sequences
- Supervised Detection of Conserved Motifs in DNA Sequences with Cosmo
- Decoding transcriptional regulatory interactions
- Computational discovery of gene regulatory binding motifs: a Bayesian perspective
- Self-organizing neural networks to support the discovery of DNA-binding motifs
- Convergence rate of Markov chain methods for genomic motif discovery
- Equi-energy sampler with applications in statistical inference and statistical mechanics
- Parallel tempering with equi-energy moves
- Heterogeneity in DNA multiple alignments: modeling, inference, and applications in motif finding
- Motif Yggdrasil: Sampling from a Tree Mixture Model
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