Supervised Detection of Regulatory Motifs in DNA Sequences

DOI10.2202/1544-6115.1015MaRDI QIDQ4459288zbMATH OpenOpenAlexWikidataFDO

Authors Biao Xing, Michael B. Eisen, Sunduz Keles, Mark J. Van der Laan, Sandrine Dudoit

Publication date 28 March 2004

Published in Statistical Applications in Genetics and Molecular Biology (Search for Journal in Brave)

Full work available at URL https://biostats.bepress.com/cgi/viewcontent.cgi?article=1072&context=ucbbiostat, http://www.bepress.com/sagmb/vol2/iss1/art5/

Mathematics Subject Classification ID

Applications of statistics to biology and medical sciences; meta analysis (62P10) Biochemistry, molecular biology (92C40)

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Cited in

(16)

• Mixture Modeling for Genome‐Wide Localization of Transcription Factors
• Tree-based multivariate regression and density estimation with right-censored data
• scientific article; zbMATH DE number 1898281 (Why is no real title available?)
• Detection of over-represented motifs corresponding to known TFBSs via motif clustering and matching
• On the Power of Profiles for Transcription Factor Binding Site Detection
• Context dependent models for discovery of transcription factor binding sites
• Sampling motifs on phylogenetic trees
• Likelihood Inference for Permuted Data With Application to Gene Regulation
• COMODE
• Estimating Motifs Under Order Restrictions
• Research in Computational Molecular Biology
• Supervised Detection of Conserved Motifs in DNA Sequences with Cosmo
• Self-organizing neural networks to support the discovery of DNA-binding motifs
• Regulatory Signals in Genomic Sequences
• \textsc{motifDiverge}: a model for assessing the statistical significance of gene regulatory motif divergence between two DNA sequences
• Heterogeneity in DNA multiple alignments: modeling, inference, and applications in motif finding

Describes a project that uses

Uses Software

• BioProspector
• NAG

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