Cited in
(only showing first 100 items - show all)- On parameters of the human genome
- Monte Carlo null models for genomic data
- Fast algorithm for extracting multiple unordered short motifs using bit operations
- Bioinformatic principles underlying the information content of transcription factor binding sites
- A statistical model for investigating binding probabilities of DNA nucleotide sequences using microarrays
- Fast profile matching algorithms - A survey
- Detection of over-represented motifs corresponding to known TFBSs via motif clustering and matching
- Review on statistical methods for gene network reconstruction using expression data
- Springer Handbook of Bio-/Neuroinformatics
- Nonoverlapping clusters: approximate distribution and application to molecular biology
- Algebraic connectivity may explain the evolution of gene regulatory networks
- Context dependent models for discovery of transcription factor binding sites
- Deep learning for inferring gene relationships from single-cell expression data
- Identification of specific sequence motifs in the upstream region of 242 human miRNA genes
- Autoregressive models for gene regulatory network inference: sparsity, stability and causality issues
- Cross-species network and transcript transfer
- An efficient algorithm to identify DNA motifs
- BioAmbients: an abstraction for biological compartments
- Analysis of transcriptional synergy between upstream regions and introns in ribosomal protein genes of yeast
- Inductive logic programming for gene regulation prediction
- Biopython
- DOCK
- GOSim
- minet
- Footprinter
- Cytoscape
- GenRGenS
- BioProspector
- MotifCM
- PEACH
- ABINIT-MP
- GOstat
- MCFDR
- BioSPI
- SimpleMKL
- TFMPvalue
- BiNGO
- CLENCH
- KEGG
- miRBase
- MEME
- Knorm
- PROCHECK
- ARACNE
- Enrichr
- DREME
- FIMO
- GeneSplicer
- BioOptimizer
- GAME
- SIRENE
- TRANSWESD
- STAMP
- WebLogo
- SWISS-MODEL
- BIPS
- CONREAL
- InteroPORC
- JASPAR
- modMine
- ORegAnno
- rVISTA
- UniPROBE
- TFBSTools
- graphite
- IntAct
- MatInspector
- MATCH
- PAGE
- OKVAR-Boost
- PMS5
- CGBayesNets
- PIPE
- RISOTTO
- ArrayExpress
- ErmineJ
- DECOD
- SeedHam
- CpG island searcher
- FISim
- cPath
- NestedMICA
- TFExplorer
- WebMOTIFS
- CisModule
- PhyME
- VisANT
- TAMBIS
- FingerPRINTScan
- PATMAT
- TEIRESIAS
- DREAM4
- A posterior probability approach for gene regulatory network inference in genetic perturbation data
- Development of \(Ki\)Bank, a database supporting structure-based drug design
- Transcription factor binding sites detection by using alignment-based approach
- Theory on the looping mediated directional-dependent propulsion of transcription factors along DNA
- Discovering cis-regulatory modules by optimizing barbecues
- Hybrid learning of Bayesian multinets for binary classification
- Decoding transcriptional regulatory interactions
- Self-organizing neural networks to support the discovery of DNA-binding motifs
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