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swMATH17201MaRDI QIDQ29062FDOQ29062

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Cited In (34)

• On parameters of the human genome
• Fast algorithm for extracting multiple unordered short motifs using bit operations
• Monte Carlo null models for genomic data
• Bioinformatic principles underlying the information content of transcription factor binding sites
• Fast profile matching algorithms - A survey
• Detection of over-represented motifs corresponding to known TFBSs via motif clustering and matching
• Review on statistical methods for gene network reconstruction using expression data
• Springer Handbook of Bio-/Neuroinformatics
• Heterogeneity in DNA Multiple Alignments: Modeling, Inference, and Applications in Motif Finding
• Deep learning for inferring gene relationships from single-cell expression data
• Algebraic connectivity may explain the evolution of gene regulatory networks
• Context dependent models for discovery of transcription factor binding sites
• Identification of specific sequence motifs in the upstream region of 242 human miRNA genes
• Autoregressive models for gene regulatory network inference: sparsity, stability and causality issues
• Cross-species network and transcript transfer
• An efficient algorithm to identify DNA motifs
• BioAmbients: an abstraction for biological compartments
• Analysis of transcriptional synergy between upstream regions and introns in ribosomal protein genes of yeast
• A Statistical Model for Investigating Binding Probabilities of DNA Nucleotide Sequences Using Microarrays
• Inductive logic programming for gene regulation prediction
• Theory on the looping mediated directional-dependent propulsion of transcription factors along DNA
• Development of \(Ki\)Bank, a database supporting structure-based drug design
• A posterior probability approach for gene regulatory network inference in genetic perturbation data
• Transcription factor binding sites detection by using alignment-based approach
• Nonoverlapping Clusters: Approximate Distribution and Application to Molecular Biology
• Discovering cis-regulatory modules by optimizing barbecues
• Seed-driven Learning of Position Probability Matrices from Large Sequence Sets.
• Hybrid learning of Bayesian multinets for binary classification
• Decoding transcriptional regulatory interactions
• Self-organizing neural networks to support the discovery of DNA-binding motifs
• Leveraging external knowledge on molecular interactions in classification methods for risk prediction of patients
• Bioinformatics. Volume I. Data, sequence analysis, and evolution
• Detection-theoretic analysis of MatInspector
• An efficient computational method for screening functional SNPs in plants

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