MUSCLE

swMATH13193MaRDI QIDQ25109FDOQ25109

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Cited In (50)

• Global alignment of molecular sequences via ancestral state reconstruction
• Protein-protein interactions can be predicted using coiled coil co-evolution patterns
• Multiple biological sequence alignment. Scoring functions, algorithms and evaluation
• A neutral evolution test derived from a theoretical amino acid substitution model
• Gaussian Process‐Based Bayesian Nonparametric Inference of Population Size Trajectories from Gene Genealogies
• Identifiability of phylogenetic parameters from \(k\)-mer data under the coalescent
• Sequence graph transform (SGT): a feature embedding function for sequence data mining
• A novel clustering method via nucleotide-based Fourier power spectrum analysis
• Generalizing rate heterogeneity across sites in statistical phylogenetics
• \textit{In silico} analysis of glutathione S-transferase supergene family revealed hitherto unreported insect specific \({\delta}\)- and \({\varepsilon}\)-GSTs and mammalian specific \({\mu}\)-GSTs in \textit{Ixodes scapularis} (Acari: Ixodidae)
• Large-Scale Multiple Sequence Alignment and Phylogeny Estimation
• Exact Multiple Sequence Alignment by Synchronized Decision Diagrams
• Data mining techniques for the life sciences
• Low complexity regions (LCRs) contribute to the hypervariability of the HIV-1 gp120 protein
• Multiobjective artificial fish swarm algorithm for multiple sequence alignment
• A novel empirical mutual information approach to identify co-evolving amino acid positions of influenza A viruses
• Cross-species network and transcript transfer
• Alignment-free phylogenetic reconstruction: Sample complexity via a branching process analysis
• A Lagrangian relaxation approach for the multiple sequence alignment problem
• Modeling the distribution of distance data in Euclidean space
• Bayesian modelling of compositional heterogeneity in molecular phylogenetics
• An overview of multiple sequence alignments and cloud computing in bioinformatics
• A global averaging method for dynamic time warping, with applications to clustering
• ADLD: a novel graphical representation of protein sequences and its application
• A potential in silico antibody-antigen based diagnostic test for precise identification of \textit{Acinetobacter baumannii}
• ThIEF: Finding Genome-wide Trajectories of Epigenetics Marks
• Adaptation of the method of musical composition for solving the multiple sequence alignment problem
• Clustering Categorical Data via Ensembling Dissimilarity Matrices
• Summarizing a set of time series by averaging: from Steiner sequence to compact multiple alignment
• The EM algorithm and the rise of computational biology
• Geometric combinatorics and computational molecular biology: Branching polytopes for RNA sequences
• Comparison of alignment free string distances for complete genome phylogeny
• Discrete wavelet packet transform based discriminant analysis for whole genome sequences
• \textsc{Rime}: repeat identification
• Indexing factors with gaps
• A time warping approach to multiple sequence alignment
• Information-Theoretic Foundations of DNA Data Storage
• ModEnzA: Accurate Identification of Metabolic Enzymes Using Function Specific Profile HMMs with Optimised Discrimination Threshold and Modified Emission Probabilities
• Compositional properties of alignments
• Bioinformatics. Volume I. Data, sequence analysis, and evolution
• Comparative gene finding. Models, algorithms and implementation
• Pattern-constrained multiple polypeptide sequence alignment
• Computational analysis in designing T cell epitopes enriched peptides of Ebola glycoprotein exhibiting strong binding interaction with HLA molecules
• MSAID: multiple sequence alignment based on a measure of information discrepancy
• Competitive evolution of H1N1 and H3N2 influenza viruses in the United States: a mathematical modeling study
• Optimal implementations of UPGMA and other common clustering algorithms
• Evolutionary analysis and structural characterization of \textit{Aquilaria sinensis} sesquiterpene synthase in agarwood formation: a computational study
• Use of image texture analysis to find DNA sequence similarities
• In silico analysis of antibody triggering biofilm associated protein in \textit{Acinetobacter baumannii}
• A Dirichlet process mixture of hidden Markov models for protein structure prediction

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