Cross-species network and transcript transfer

MaRDI QIDQ2793214zbMATH OpenFDO

Authors Robert Pesch

Publication date 15 March 2016

Full work available at URL http://d-nb.info/1084582902/34, http://nbn-resolving.de/urn:nbn:de:bvb:19-191417

Mathematics Subject Classification ID

Learning and adaptive systems in artificial intelligence (68T05) Research exposition (monographs, survey articles) pertaining to biology (92-02) Neural networks for/in biological studies, artificial life and related topics (92B20) Systems biology, networks (92C42) Genetics and epigenetics (92D10) Protein sequences, DNA sequences (92D20)

Recommendations

• Introduction to biological networks
• Bayesian analysis of biological networks: clusters, motifs, cross-species correlations
• Biological Networks: Comparison, Conservation, and Evolutionary Trees
• Evaluation of phylogenetic footprinting and its application for improved prediction of transcription factor binding sites
• Research in Computational Molecular Biology

Describes a project that uses

Uses Software

• WEKA
• MAFFT
• ClustalW
• MUSCLE
• T-coffee
• KEGG
• TRANSFAC
• FIMO
• CONREAL
• modMine
• BIPS
• ORegAnno
• rVISTA
• JASPAR
• InteroPORC
• UniPROBE

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