MAFFT
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Cited in
(only showing first 100 items - show all)- A Lagrangian relaxation approach for the multiple sequence alignment problem
- Edlib
- Pyvolve
- SimPlot++
- EvoVGM
- smoothedLasso
- BioWorkbench
- MIRA
- ape
- Rfam
- Bioinformatics. Volume II: structure, function, and applications
- GlobPlot
- Alignment-free phylogenetic reconstruction: Sample complexity via a branching process analysis
- PHYLIP
- MrBayes
- RAxML
- PAUP*
- SeqinR
- BIONJ
- CONTRAlign
- MODELTEST
- LASER
- phangorn
- Clustal
- On the comparison of incompatibility of split systems across different numbers of taxa
- Quasi-optimal partial order reduction
- Genome-wide covariation in SARS-CoV-2
- Compositional properties of alignments
- Balibase
- Soap
- HMMER
- bioperl
- PhyML
- PAML
- AUGUSTUS
- Discrete wavelet packet transform based discriminant analysis for whole genome sequences
- ADLD: a novel graphical representation of protein sequences and its application
- MSAProbs
- 3DCoffee
- ProbCons
- DIALIGN
- ClustalW
- GATK
- CloudBurst
- A time warping approach to multiple sequence alignment
- SplitsTree
- Secator
- CLUSTAL
- DIALIGN-TX
- Pattern-constrained multiple polypeptide sequence alignment
- QSCORE
- MUMMALS
- Wisconsin
- LAGAN
- MUSCLE
- Kalign
- T-coffee
- Adaptation of the method of musical composition for solving the multiple sequence alignment problem
- GAGE
- MTRAP
- Biostrings
- Samtools
- tracker2
- Cross-species network and transcript transfer
- Clustal X
- MEGA6
- Multiple biological sequence alignment. Scoring functions, algorithms and evaluation
- Rose
- Bali-phy
- ANNOTATOR
- LIGPLOT
- NUCPLOT
- MATRAS
- DBAli tools
- pKNOT
- SCOP2
- CUPSAT
- ENCoM
- DUET
- MAESTRO
- PDB_REDO
- OBSTRUCT
- SFCHECK
- SUPERFAMILY
- HHblits
- BLAT
- MOTIF-EM
- ADP_EM
- FUGUE
- GenePattern
- OpenCyto
- VaZyMolO
- MeDor
- MetaDisorder
- PreDisorder
- MFDp2
- PONDR-FIT
- PROFbval
- StrBioLib
- RONN
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